Wayne State University

AIM HIGHER

Wayne State University

High Performance Computing Services

Applications & Developer Tools




Abacus logo ABAQUS
http://www.3ds.com/products-services/simulia/portfolio/abaqus/overview/
A solver which uses traditional implicit integration scheme to solve finite element analyses, explicit integration scheme to solve highly nonlinear transient dynamic and quasi-static analyses, and provides an integrated modeling and visualization environment for the analysis of products.
/wsu/apps/pre-compiled/abaqus/abaqus-6.9-2
Afni logo AFNI
https://afni.nimh.nih.gov/afni
AFNI (Analysis of Functional NeuroImages) is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity.
/wsu/apps/modules/afni-2011_12_21_1014
Abinit logo Abinit
http://www.abinit.org/
Program to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.
/wsu/apps/gnu-4.4.7/abinit/abinit-7.6.4
/wsu/apps/intel-14.0.2/abinit/abinit-7.6.4
Agisoft logo Agisoft PhotoScan
http://www.abinit.org/
Software that performs photogrammetric processing of digital images and generates 3D spatial data.
/wsu/apps/pre-compiled/photoscan-pro/photoscan-pro-1.2.4
Amber logo AMBER
http://ambermd.org/
Programs that allow users to carry out molecular dynamics simulations, particularly on biomoleculars.
/wsu/apps/gnu-4.4.7/amber/amber12
/wsu/apps/gnu-4.4.7/amber/amber12-ib
/wsu/apps/gnu-4.4.7/amber/amber12-ib-save
/wsu/apps/gnu-4.4.7/amber/amber12-ib-gpu
/wsu/apps/gnu-4.4.7/amber/amber14/
/wsu/apps/gnu-4.4.7/amber/amber14-ib-gpu/
/wsu/apps/modules/amber-14-mpich2-1.5b2
Ant logo ANTs (Advanced Normalization Tools)
http://www.picsl.upenn.edu/ANTS/
Library of tools for brain and image mapping.
/wsu/apps/gnu-4.4.7/ants/ants-git-clone-2015-07-15/
ATLAS ATLAS (Automatically Tuned Linear Algebra Software)
http://math-atlas.sourceforge.net/
Software providing portable optimal linear algebra software. Includes full BLAS API and a small subset of the LAPACK API.
/wsu/apps/gnu-4.7.2/ATLAS/ATLAS-3.10.0
/wsu/apps/gnu-4.4.7/atlas/atlas-3.10.2
bam2fastq bam2fastq
http://gsl.hudsonalpha.org/information/software/bam2fastq
Tool for extracting raw sequences..
/wsu/apps/gnu-4.4.7/bam2fastq/bam2fastq-1.1.0
BEDTools BEDTools
http://code.google.com/p/bedtools/
The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage.
BioPerl logo BioPerl
http://www.bioperl.org/wiki/Main_Page
Module for Perl. More information
BLCR logo BLCR
http://crd.lbl.gov/departments/computer-science/CLaSS/research/BLCR/
BLCR (Berkeley Lab Checkpoint/Restart) allows programs running on Linux to be "checkpointed" (written entirely to a file), and then later "restarted"
/wsu/apps/modules/blcr-0.8.5
khmer bleeding-edge
https://github.com/ged-lab/khmer.git
/wsu/apps/gnu-4.4.7/bleeding-edge/bleeding-edge-khmer-git-2016-02-02
Boost logo Boost
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
A series of libraries for C++.
/wsu/apps/gnu-4.4.7/boost/boost-1.55.0
Bowtie logo Bowtie
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Short read aligner for DNA sequences.
/wsu/apps/gnu-4.4.7/bowtie/bowtie-1.0.1
/wsu/apps/gnu-4.4.7/bowtie/bowtie2-2.2.3
BWA Burrow-Wheeler Aligner 0.6.1
http://bio-bwa.sourceforge.net/
BWA is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.
/wsu/apps/gnu-4.4.7/bwa/bwa-0.7.12
Clonalframe ClonalFrame
http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
A package used to identify clonal relationships between members of a sample of sequence data.
/wsu/apps/pre-compiled/ClonalFrame/ClonalFrame-1.2
CLN Cmake 2.8.12.2
http://www.cmake.org/cmake/resources/software.html
Tools designed to build, test and package software
/wsu/apps/modules/cmake-2.8.12.2
COMSOL image COMSOL
https://www.comsol.com/video/introduction-comsol-multiphysics-52
COMSOL Multiphysics version 5.2 enhances your simulation capabilities with improved features to the core functionality, the Application Builder, and COMSOL Server.
/wsu/apps/modules/COMSOL52
Converge Converge
https://convergecfd.com/m
/wsu/apps/pre-compiled/converge/converge-studio-2.2.0/
/wsu/apps/pre-compiled/converge/converge-studio-2.3/
/wsu/apps/pre-compiled/converge/converge-2.3
Cufflinks Cufflinks
http://cufflinks.cbcb.umd.edu/
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
/wsu/apps/pre-compiled/cufflinks/cufflinks-2.2.1
Expat logo Expat
http://expat.sourceforge.net/
An XML parser library.
/wsu/apps/gnu-4.4.7/expat-2.0.1
FastML FastML
http://fastml.tau.ac.il/
Bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences.
/wsu/apps/gnu-4.7.2/FastML/FastML.v3.1
FastTree FastTree
http://meta.microbesonline.org/fasttree/
Software for inferring approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
/wsu/apps/gnu-4.7.2/FastTree/FastTree-2.1.7
FastX FastX-Toolkit
http://hannonlab.cshl.edu/fastx_toolkit/
/wsu/apps/gnu-4.4.7/fastx_toolkit/fastx_toolkit-0.0.13.2
FFTW logo FFTW
http://www.fftw.org/
Library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, of both real and complex data, and of even/odd data such as the discrete cosine/sine transforms or DCT/DST.
/wsu/apps/gnu-4.4.7/fftw/fftw2-2.1.5
/wsu/apps/gnu-4.4.7/fftw/fftw3-3.3.4
/wsu/apps/pgi-14.6/fftw/fftw-2.1.5
/wsu/apps/pgi-14.6/fftw/fftw-3.3.4-openmp
Reaction Design logo FORTÉ CFD
http://www.reactiondesign.com/products/forte/
Simulation package for combustion engines.
/wsu/apps/pre-compiled/forte/forte40141_linuxx8664/bin/
APTECH logo Gauss
http://www.aptech.com/
Matrix programming language for statistics and mathematics.
/wsu/apps/pre-compiled/gauss/gauss14
Gaussian logo Gaussian
http://www.gaussian.com
Programs for electronic structure. Predicts the energies, molecular structures, and vibrational frequencies of molecular systems, along with numerous molecular properties derived from basic computation types. Used to study molecules and reactions under a wide range of conditions, including both stable species and compounds which are difficult or impossible to observe experimentally such as short-lived intermediates and transition structures.
/export/usr/gaussian_`uname -m`
HOW TO RUN A GAUSSIAN JOB - SIMPLE
HOW TO RUN A GAUSSIAN JOB - ADVANCED
GDL Gnu Data Language
http://gnudatalanguage.sourceforge.net/
/wsu/apps/gnu-4.4.7/gdl/gdl-0.9.5
Genome Tools Genome Tools
http://genometools.org/
/wsu/apps/gnu-4.4.7/GenomeTools/genometools-1.5.8
WSU Grid Logo Genomics Latest
Series of applications and libraries for genomics research.
  • bam2fastq
  • Boost
  • Bowtie
  • Genome Tools
  • Integrated Genome Viewer (IGV)
  • LTRsift
  • SAMtools
  • SHORE
  • TopHat
GFOLD GFOLD
https://bitbucket.org/feeldead/gfold/
Generalized fold change algorithm for producing rankings of differentially expressed genes from RNA-seq data.
/wsu/apps/gnu-4.4.7/gfold/gfold.V1.1.3
GNU logo GNU
https://gcc.gnu.org/

GSL logo Gnu Scientific Libraries
http://www.gnu.org/software/gsl/
Numerical library for C and C++ programming. Provides a wide range of mathematical routines, over 1000 functions, and an extensive test suite.
/wsu/apps/gnu-4.4.7/gsl/gsl-1.9
/wsu/apps/gnu-4.4.7/gsl/gsl-1.15/
/wsu/apps/gnu-4.4.7/gsl/gsl-1.16/
GQview logo GQview
http://gqview.sourceforge.net/
/wsu/apps/gnu-4.4.7/gqview/gqview-2.0.4/bin/gqview
Grace logo Grace
http://plasma-gate.weizmann.ac.il/Grace/
/wsu/apps/gnu-4.4.7/grace/grace-5.1.23
Gromacs logo Gromacs
http://www.gromacs.org/
/wsu/apps/gnu-4.4.7/gromacs/gromacs-5.1.2
Gubbins Gubbins
http://sanger-pathogens.github.io/gubbins/
Genealogies Unbiased By recomBinations In Nucleotide Sequences (Gubbins)
/wsu/apps/gnu-4.7.2/gubbins/gubbins-1.1.2/bin/
HDF logo HDF
http://www.hdfgroup.org/
Library that provides high-level APIs and a low-level data interface.
/wsu/apps/gnu-4.4.7/hdf/hdf-4.2.10/bin/
/wsu/apps/gnu-4.4.7/hdf5/hdf5-1.8.13/bin/
HDF logo HDFView
http://www.hdfgroup.org/products/java/hdfview/
Visual tool for browsing and editing HDF4 and HDF5 files.
/wsu/apps/pre-compiled/hdf-java/HDFView-2.10.1-Linux/HDF_Group/HDFView/2.10.1/bin
Hisat logo Hisat
http://www.ccb.jhu.edu/software/hisat/index.shtml
HISAT is a fast and sensitive spliced alignment program for mapping RNA-seq reads.
/wsu/apps/modules/hisat-0.1.6
/wsu/apps/modules/hisat2-2.0.1
Hmmer logo Hmmer
http://hmmer.org/
HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
/wsu/apps/modules/hmmer-3.1b2
IBM logo IBM ILOG CPLEX Optimizer
http://www-01.ibm.com/software/integration/optimization/cplex-optimizer/
Optimization software package for solving integer, linear, and quadratic programming problems.
/wsu/apps/gnu-4.4.7/CPLEX/CPLEX_Studio1261
IBM logo Integrated Genome Viewer (IGV)
http://www.broadinstitute.org/igv/
Visualization tool for viewing large, integrated genomic datasets.
/wsu/apps/pre-compiled/IGV/IGV_2.3.34
Intel logo Intel

https://software.intel.com/en-us/intel-compilers
C++ and Fortran compilers for Intel.
IsoDE IsoDE
http://dna.engr.uconn.edu/?page_id=517
Bootstrapping based software package that can be used to perform differential gene expression analysis for RNA-Seq data both with and without replicates.
/wsu/apps/gnu-4.4.7/isode/IsoDE-1.0.0/bin
ITK logo Insight Segmentation and Registration Toolkit (ITK)
http://www.itk.org
Software suite for image analysis.
/wsu/apps/gnu-4.4.7/itk/itk-git-clone-2015-07-2
Java logo Java
http://www.oracle.com/technetwork/java/javase/downloads/index.html
/wsu/apps/pre-compiled/java/jdk1.6.0_45/
Jellyfish Jellyfish
https://github.com/gmarcais/Jellyfish
/wsu/apps/gnu-4.4.7/jellyfish/jellyfish-2.2.3/
Netlib's logo LAPACK
http://www.netlib.org/lapack/
Routines for solving eigenvalue problems, singular valve problems, least-squares solutions systems of equations, and systems of simultaneous linear equations.
/wsu/apps/gnu-4.4.7/lapack/lapack-3.5.0
Latex Latex
http://www.latex-project.org/
Document preparation system for high-quality typesetting
/usr/bin/latex
BioSolveIT's logo LeadIT
http://www.biosolveit.de/leadit/
Drug design program.
/wsu/apps/pre-compiled/leadit/leadit-2.1.6-Linux-x64
Netlib's logo libdap
https://apps.fedoraproject.org/packages/libdap
/wsu/apps/gnu-4.4.7/dap/libdap-3.13.1
FastX Libgtextutils
http://hannonlab.cshl.edu/fastx_toolkit/
/wsu/apps/gnu-4.4.7/libgtextutils/libgtextutils-0.6.1
LibGD's logo libgd-2.1.0
https://github.com/libgd/libgd
GD is written in C, and "wrappers" are available for Perl, PHP and other languages. GD can read and write many different image formats. GD is commonly used to generate charts, graphics, thumbnails, and most anything else, on the fly.
/wsu/apps/libgd-2.1.0
FastX Libgtextutils
http://hannonlab.cshl.edu/fastx_toolkit/
/wsu/apps/gnu-4.4.7/libgtextutils/libgtextutils-0.6.1
FastX Libgtextutils
http://hannonlab.cshl.edu/fastx_toolkit/
/wsu/apps/gnu-4.4.7/libgtextutils/libgtextutils-0.6.1
LSTC logo LS-DYNA
http://www.lstc.com/
A general purpose transient dynamic finite element program capable of simulating complex real world problems optimized for shared and distributed memory.
/wsu/apps/pre-compiled/ls-dyna/ls-dyna-r8.0.0
LTRsift LTRsift
www.zbh.uni-hamburg.de/?id=378
/wsu/apps/gnu-4.4.7/ltrsift/ltrsift-1.0.2
CBRC logo MAFFT
http://mafft.cbrc.jp/alignment/software/linux.html
/wsu/apps/gnu-4.4.7/MAFFT/mafft-7.245-with-extensions/
MatLab logo MATLAB
http://www.mathworks.com/products/matlab/
Language and environment for numeric computation, the visualization and analysis of data, and algorithm development.
/wsu/apps/pre-compiled/matlab/matlab-R2010b
/wsu/apps/pre-compiled/matlab/matlab-R2015b
/wsu/apps/pre-compiled/matlab/matlab-R2016b
MEME/MAST logo MEME Suite
http://meme.nbcr.net/meme/
Programs used to discover motifs in groups of related DNA or protein sequences and to search sequence databases using motifs.
/wsu/apps/gnu-4.4.7/meme/meme-4.10.0/bin/meme
Monolix logo Monolix
http://www.lixoft.eu/products/monolix/product-monolix-overview/
Software for model-based drug development, performing population analysis, modeling PK/PD and used for other complex biochemical/physiological processes.
/wsu/apps/pre-compiled/monolix/monolix-432s/bin/Monolix.sh
MUSIC logo MUSIC (MUltiScale EnrIchment Calling)
http://omictools.com/music-multiscale-enrichment-calling-s7583.html
Tool for identifying enriched region at multiple length scales using data from ChIP-Seq experiments.
/wsu/apps/gnu-4.4.7/music/music-2015-04-17/bin/MUSIC
MVAPICH logo MVAPICH
http://mvapich.cse.ohio-state.edu/
Libraries for message passing optimized for Infiniband.
On Nodes With Infiniband:
/wsu/apps/modules/mvapich2-2.2a/amber12b
/wsu/apps/modules/mvapich2-2.2a/compiler-mpi
/wsu/apps/modules/mvapich2-2.2a/fftw3-3.3.4-ib
NAMD logo NAMD
http://www.ks.uiuc.edu/Research/namd/
Parallel, object-oriented code. Used to design high performance simulations of large biomolecular systems.
/wsu/apps/pre-compiled/namd/NAMD_2.11b1_Linux-x86_64-multicore
/wsu/apps/pre-compiled/namd/NAMD_2.11b1_Linux-x86_64-TCP
/wsu/apps/pre-compiled/namd/NAMD_2.11b1_Linux-x86_64-multicore-CUDA
/wsu/apps/pre-compiled/namd/NAMD_2.11_Linux-x86_64-multicore
/wsu/apps/pre-compiled/namd/NAMD_2.11_Linux-x86_64-TCP
NCLB logo NCLB
https://hpc.nih.gov/apps/ncbi-toolkit.html
The NCBI C++ Toolkit is a set of executables and libraries for a multitude of sequence analysis functions.
/wsu/apps/ncbi-2015
NetCDF logo NetCDF
http://www.unidata.ucar.edu/software/netcdf/
Libraries and data formats that support the creation, access, and sharing of array-oriented scientific data.
/wsu/apps/pre-compiled/netcdf
NumPy logo NumPy
http://numpy.scipy.org/
Module for Python. More information.
NVIDIA logo NVIDIA
http://www.nvidia.com/
OpenFOAM logo OpenFOAM
http://www.openfoam.com/
The Open Field Operation and Manipulation CFD toolbox.
/wsu/apps/gnu-4.7.2/OpenFOAM/OpenFOAM-2.2.2/bin
/wsu/apps/gnu-4.7.2/OpenFOAM/OpenFOAM-2.3.0/bin
Environmental Variables:
FOAM_RUN~/OpenFOAM/$USER-2.3.0/run
FOAM_USER_APPBIN~/OpenFOAM/$USER-2.3.0/platforms/linux64GccDPOpt/bin
FOAM_USER_LIBBIN~/OpenFOAM/$USER-2.3.0/platforms/linux64GccDPOpt/lib
FOAM_SETTINGSUse this to pass command line settings
FOAM_SIGFPEUse this to stop OpenFOAM from calculating when it encounters a NaN (Not a Number) by setting it to a non-zero number
Open-MPI logo Open MPI
http://www.open-mpi.org/
Libraries for message passing, compiled to operate with myrinet and should be used for mpi applications.
/wsu/apps/modules/openmpi-1.8.4
/wsu/apps/modules/openmpi-1.8.8
ParaView logo ParaView
http://www.paraview.org/
Multi-platform data analysis and visualization application.
Perl logo Perl
http://www.perl.org/
Practical Extraction and Report Language (Perl) is a a programming language useful for various tasks, such as bioinformatics, system administration, finance, network programming, web development.
/wsu/apps/gnu-4.4.7/perl/perl-5.20.1/
/wsu/apps/gnu-4.7.2/perl/perl-5.20.1
PGI logo PGI
http://www.pgroup.com/
Compilers, Fortran, C and C++ for 64-bit AMD64 and 64-bit IA32/EM64T processor-based Linux systems. Includes LAPACK and BLAS Libraries. F77 and F90 routines are still provided by the PGI compiler suite.
/wsu/apps/compilers/pgi/pgicdk-126/linux86-64/12.6
/wsu/apps/compilers/pgi/pgicdk-1210/linux86-64/12.10
/wsu/apps/compilers/pgi/pgicdk-146/modulefiles/pgi64/14.6
Picard Picard
http://broadinstitute.github.io/picard/
Application for manipulating SAM (Sequence Alignment/Map) files.
/wsu/apps/gnu-4.4.7/picard-tools/broadinstitute-picard-d7d30fb
PostgreSQL logo PostgreSQL
http://www.postgresql.org/
Database, with sophisticated enterprise class features.
Preseq Preseq
http://smithlabresearch.org/software/preseq/
Program for analyzing library complexity
/wsu/apps/gnu-4.4.7/presq/presq-2015-07-10-git/preseq
Python logo Python
http://www.python.org/
Language, interpreted, interactive, and object-oriented. Comparable to Tcl, Perl, Scheme or Java.
/wsu/apps/compilers/python-2.7
/wsu/apps/gnu-4.4.7/python/python-2.7/
/wsu/apps/gnu-4.4.7/python/python-2.7.9/
/wsu/apps/gnu-4.4.7/python/python-3.4.3/
/wsu/apps/gnu-4.7.2/python/Anaconda/Anaconda-2.1.0/bin
  • beautifulsoup4 4.3.2
  • biopython 1.65
  • chardet 2.3.0
  • cython 0.21
  • gemtools 1.7.1
  • htseq 0.6.1
  • macs 1.4.2
  • MACS2-2.1.0.20150420
  • ngcgh 0.4.4
  • nose 1.3.4
  • numpy 1.9.0b1
  • pandas 0.14.1
  • pysam 0.8.0
  • python-dateutil 2.2
  • pytz 2014.4
  • RSeQC-2.6.1
  • six 1.7.3
  • wsgiref 0.1.2
  • conda-3.7.0
  • conda-build-1.8.2
  • license-1.1
  • abstract-rendering-0.5.1
  • argcomplete-0.8.1
  • astropy-0.4.2
  • atom-0.3.9
  • beautiful-soup-4.3.2
  • binstar-0.7.1
  • biopython 1.65
  • bitarray-0.8.1
  • blaze-0.6.3
  • blz-0.6.2
  • bokeh-0.6.1
  • boto-2.32.1
  • cairo-1.12.2-2
  • casuarius-1.1
  • cdecimal-2.3
  • cffi-0.8.6
  • chaco-4.4.1
  • colorama-0.3.1
  • configobj-5.0.6
  • cryptography-0.5.4
  • curl-7.38.0-0
  • cython-0.21
  • cytoolz-0.7.0
  • datashape-0.3.0
  • dateutil-2.1-py27_2
  • decorator-3.4.0
  • docutils-0.12
  • dynd-python-0.6.5
  • enable-4.3.0
  • enaml-0.9.8
  • flask-0.10.1
  • freetype-2.4.10-0
  • future-0.13.1
  • futures-2.1.6
  • gevent-1.0.1
  • gevent-websocket-0.9.3
  • greenlet-0.4.4
  • grin-1.2.1
  • h5py-2.3.1
  • hdf5-1.8.13-0
  • ipython-2.2.0
  • ipython-notebook-2.2.0
  • ipython-qtconsole-2.2.0
  • itsdangerous-0.24
  • jdcal-1.0
  • jinja2-2.7.3
  • jpeg-8d-0
  • kiwisolver-0.1.3
  • lcms-1.19-0
  • libdynd-0.6.5-0
  • libffi-3.0.13-0
  • libpng-1.5.13-1
  • libsodium-0.4.5-0
  • libtiff-4.0.2-1
  • libxml2-2.9.0-0
  • libxslt-1.1.28-0
  • llvm-3.3-0
  • llvmpy-0.12.7
  • lxml-3.4.0
  • markupsafe-0.23
  • matplotlib-1.4.0
  • mock-1.0.1
  • mpi4py-1.3
  • mpich2-1.4.1p1-0
  • multipledispatch-0.4.7
  • networkx-1.9.1
  • nltk-3.0.0
  • nose-1.3.4
  • NucleoATAC
  • numba-0.14.0
  • numexpr-2.3.1
  • numpy-1.9.0
  • openpyxl-1.8.5
  • openssl-1.0.1h-1
  • pandas-0.14.1
  • patsy-0.3.0
  • pep8-1.5.7
  • pil-1.1.7
  • pip-1.5.6
  • pixman-0.26.2-0
  • ply-3.4
  • psutil-2.1.1
  • py-1.4.25
  • py2cairo-1.10.0
  • pycosat-0.6.1
  • pycparser-2.10
  • pycrypto-2.6.1
  • pycurl-7.19.5
  • pyface-4.4.0
  • pyflakes-0.8.1
  • pygments-1.6
  • pyopenssl-0.14
  • pyparsing-2.0.1
  • pyqt-4.10.4
  • pytables-3.1.1
  • pytest-2.6.3
  • pytz-2014.7
  • pyyaml-3.11
  • pyzmq-14.3.1
  • qt-4.8.5-0
  • readline-6.2-2
  • redis-2.6.9-0
  • redis-py-2.9.1
  • requests-2.4.1
  • rope-0.9.4
  • runipy-0.1.1
  • scikit-image-0.10.1
  • scikit-learn-0.15.2
  • scipy-0.14.0
  • setuptools-5.8
  • sip-4.15.5
  • six-1.8.0
  • sockjs-tornado-1.0.1
  • sphinx-1.2.3
  • spyder-2.3.1
  • spyder-app-2.3.1
  • sqlalchemy-0.9.7
  • sqlite-3.8.4.1-0
  • ssl_match_hostname-3.4.0.2
  • statsmodels-0.5.0
  • sympy-0.7.5
  • system-5.8-1
  • theano-0.6.0
  • tk-8.5.15-0
  • toolz-0.7.0
  • tornado-4.0.2
  • traits-4.4.0
  • traitsui-4.4.0
  • ujson-1.33
  • unicodecsv-0.9.4
  • util-linux-2.21-0
  • werkzeug-0.9.6
  • xlrd-0.9.3
  • xlsxwriter-0.5.7
  • xlwt-0.7.5
  • yaml-0.1.4-0
  • zeromq-4.0.4-0
  • zlib-1.2.7-0
  • anaconda-2.1.0
  • _cache-0.0-x0
  • alabaster 0.7.3
  • argcomplete 0.8.5
  • atlas 0.27.0
  • babel 1.3
  • backports.ssl-match-hostname 3.4.0.2
  • beautifulsoup4 4.3.2
  • binstar 0.10.1
  • biopython 1.65
  • bitarray 0.8.1
  • boto 2.37.0
  • cache 1.0.3
  • certifi 14.5.14
  • cffi 0.9.2
  • chardet 2.3.0
  • clyent 0.3.4
  • colorama 0.3.3
  • conda unknown
  • configobj 5.0.6
  • cryptography 0.8.1
  • cssselect 0.9.1
  • cython 0.22
  • cytoolz 0.7.2
  • danpos-2.2.2
  • decorator 3.4.2
  • dendropy 3.12.2
  • distribute 0.7.3
  • docutils 0.12
  • enum34 1.0.4
  • fastcache 1.0.2
  • flask 0.10.1
  • funcsigs 0.4
  • futures 2.2.0
  • gevent 1.0.1
  • greenlet 0.4.5
  • grin 1.2.1
  • htseq 0.6.1
  • ipython 3.1.0
  • itsdangerous 0.24
  • jdcal 1.0
  • jedi 0.8.1
  • jinja2 2.7.3
  • jsonschema 2.4.0
  • libtiff 0.4.0
  • lxml 3.4.2
  • macs 1.4.3
  • MACS2-2.1.0.20150420
  • markupsafe 0.23
  • mistune 0.5.1
  • mock 1.0.1
  • multipledispatch 0.4.7
  • networkx 1.9.1
  • ngcgh 0.4.4
  • nltk 3.0.2
  • nose 1.3.6
  • numba 0.18.1
  • numpy 1.10.0.dev0-cf2f063
  • openpyxl 2.2.1
  • pep8 1.6.2
  • pillow 2.8.1
  • pip 6.1.1
  • ply 3.4
  • psutil 2.2.1
  • ptyprocess 0.4
  • py 1.4.26
  • pyasn1-modules 0.0.5
  • pyasn1 0.1.7
  • pycosat 0.6.0
  • pycparser 2.10
  • pycrypto 2.6.1
  • pycurl 7.19.5.1
  • pyflakes 0.8.1
  • pygments 2.0.2
  • pyopenssl 0.14
  • pyparsing 2.0.3
  • pysam 0.8.2.1
  • pytest 2.7.0
  • python-dateutil 2.4.2
  • pytz 2015.2
  • pyyaml 3.11
  • pyzmq 14.5.0
  • readline 6.2.4.1
  • redis 2.10.3
  • reportlab 3.1.44
  • requests 2.6.0
  • rope 0.10.2
  • rpy2 2.5.5
  • runipy 0.1.3
  • setuptools 15.0
  • singledispatch 3.4.0.3
  • six 1.9.0
  • snowballstemmer 1.2.0
  • sphinx-rtd-theme 0.1.7
  • sphinx 1.3.1
  • spyder 2.3.4
  • sqlalchemy 0.9.9
  • sympy 0.7.6
  • terminado 0.5
  • threadpool 1.2.7
  • toolz 0.7.1
  • tornado 4.1
  • twisted 15.0.0
  • ujson 1.33
  • unicodecsv 0.11.0
  • werkzeug 0.10.4
  • xlrd 0.9.3
  • xlsxwriter 0.7.2
  • xlwt 0.7.5
  • zope.interface 4.1.2
Espresso logo Quantum Espresso
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Quantum Espresso is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale
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/wsu/apps/modules/Qt-5.4.0
R logo R
http://www.r-project.org/
Language and Environment for statistical computing and graphics. GNU project which is Similar to the S language and environment.
/wsu/apps/gnu-4.4.7/R/R-3.1.0/bin/R/
/wsu/apps/gnu-4.4.7/R/R-3.1.1/bin/R
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/wsu/apps/gnu-4.4.7/R/R-3.2.1/bin/R /wsu/apps/gnu-4.4.7/R/R-3.2.3/bin/R
  • abind Combine multi-dimensional arrays
  • actuar Actuarial functions
  • ADGofTest Anderson-Darling GoF test
  • AER Applied Econometrics with R
  • affy Methods for Affymetrix Oligonucleotide Arrays
  • affyio Tools for parsing Affymetrix data files
  • AmericanCallOpt This package includes pricing function for selected American call options with underlying assets that generate payouts.
  • annotate Annotation for microarrays
  • AnnotationDbi Annotation Database Interface
  • AnnotationForge Code for Building Annotation Database Packages
  • aod Analysis of Overdispersed Data
  • apt Asymmetric Price Transmission (apt)
  • ash David Scott's ASH routines
  • AutoSEARCH General-to-Specific (GETS) Model Selection
  • backtest Exploring portfolio-based conjectures about financial instruments
  • base The R Base Package
  • base64 Base 64 encoder/decoder
  • bayesGARCH Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
  • bayesm Bayesian Inference for Marketing/Micro-econometrics
  • bdsmatrix Routines for Block Diagonal Symmetric matrices
  • beanplot Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
  • betareg Beta Regression
  • betategarch Estimation and simulation of first-order Beta-t-EGARCH models
  • biglm bounded memory linear and generalized linear models
  • Biobase Biobase: Base functions for Bioconductor
  • BiocGenerics Generic functions for Bioconductor
  • BiocInstaller Install/Update Bioconductor and CRAN Packages
  • Biostrings String objects representing biological sequences, and matching algorithms
  • bit A class for vectors of 1-bit booleans
  • bitops Bitwise Operations
  • blockmodeling An R package for Generalized and classical blockmodeling of valued networks
  • boot Bootstrap Functions (originally by Angelo Canty for S)
  • bootstrap Functions for the Book "An Introduction to the Bootstrap"
  • bumphunter Bump Hunter
  • BurStFin Burns Statistics Financial
  • BurStMisc Burns Statistics miscellaneous
  • CADFtest This package performs the CADF unit root test proposed in Hansen (1995).
  • car Companion to Applied Regression
  • caTools Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
  • ccgarch Conditional Correlation GARCH models
  • CDNmoney Components of Canadian Monetary and Credit Aggregates
  • censReg Censored Regression (Tobit) Models
  • ChainLadder Statistical methods for the calculation of outstanding claims reserves in general insurance
  • chron Chronological objects which can handle dates and times
  • class Functions for Classification
  • cluster Cluster Analysis Extended Rousseeuw et al.
  • coda Output analysis and diagnostics for MCMC
  • codetools Code Analysis Tools for R
  • colorspace Color Space Manipulation
  • compiler The R Compiler Package
  • ConvergenceConcepts Seeing convergence concepts in action
  • cplm Compound Poisson linear models
  • CreditMetrics Functions for calculating the CreditMetrics risk model
  • crp.CSFP CreditRisk+ portfolio model
  • ctv CRAN Task Views
  • cubature Adaptive multivariate integration over hypercubes
  • datasets The R Datasets Package
  • data.table Extension of data.frame for fast indexing, fast ordered joins, fast assignment, fast grouping and list columns.
  • DBI R Database Interface
  • Defaults Create Global Function Defaults
  • deldir Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
  • DEoptim Global optimization by Differential Evolution
  • deSolve General solvers for initial value problems of ordinary differential equations (ODE), partial differential equations (PDE), differential algebraic equations (DAE), and delay differential equations (DDE).
  • dichromat Color Schemes for Dichromats
  • digest Create cryptographic hash digests of R objects
  • dlm Bayesian and Likelihood Analysis of Dynamic Linear Models
  • doRNG Generic Reproducible Parallel Backend for foreach Loops
  • dse Dynamic Systems Estimation (time series package)
  • dyn Time Series Regression
  • dynlm Dynamic Linear Regression
  • EBSeq An R package for gene and isoform differential expression analysis of RNA-seq data
  • Ecdat Data sets for econometrics
  • effects Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models
  • erer Empirical Research in Economics with R
  • ESG ESG - A package for asset projection
  • EvalEst Dynamic Systems Estimation - extensions
  • evd Functions for extreme value distributions
  • evdbayes Bayesian Analysis in Extreme Value Theory
  • evir Extreme Values in R
  • expsmooth Data sets from "Forecasting with exponential smoothing"
  • extRemes Extreme value toolkit.
  • fame Interface for FAME time series database
  • fArma ARMA Time Series Modelling
  • fAsianOptions EBM and Asian Option Valuation
  • fAssets Rmetrics - Assets Selection and Modelling
  • fastICA FastICA Algorithms to perform ICA and Projection Pursuit
  • fBasics Rmetrics - Markets and Basic Statistics
  • fBonds Bonds and Interest Rate Models
  • fCopulae Rmetrics - Dependence Structures with Copulas
  • fda Functional Data Analysis
  • fExoticOptions Exotic Option Valuation
  • fExtremes Rmetrics - Extreme Financial Market Data
  • ff memory-efficient storage of large data on disk and fast access functions
  • fgac Generalized Archimedean Copula
  • fGarch Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
  • fields Tools for spatial data
  • fImport Rmetrics - Economic and Financial Data Import
  • FinAsym Classifies implicit trading activity from market quotes and computes the probability of informed trading
  • FinTS Companion to Tsay (2005) Analysis of Financial Time Series
  • FKF Fast Kalman Filter
  • flexmix Flexible Mixture Modeling
  • fma Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998)
  • fMultivar Multivariate Market Analysis
  • fNonlinear Nonlinear and Chaotic Time Series Modelling
  • fOptions Basics of Option Valuation
  • foreach Foreach looping construct for R
  • forecast Forecasting functions for time series and linear models
  • foreign Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ...
  • Formula Extended Model Formulas
  • fPortfolio Rmetrics - Portfolio Selection and Optimization - ebook available at www.rmetrics.org
  • fracdiff Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
  • fRegression Regression Based Decision and Prediction
  • frontier Stochastic Frontier Analysis
  • fTrading Technical Trading Analysis
  • fUnitRoots Trends and Unit Roots
  • futile.any Futile library to provide some polymorphic operations
  • futile.logger A logging library for R
  • futile.matrix Futile matrix utilities
  • futile.options Futile options management
  • fxregime Exchange Rate Regime Analysis
  • gam Generalized Additive Models
  • gamlss Generalised Additive Models for Location Scale and Shape.
  • gamlss.data GAMLSS Data.
  • gamlss.dist Distributions to be used for GAMLSS modelling.
  • gdata Various R programming tools for data manipulation
  • geepack Generalized Estimating Equation Package
  • genefilter genefilter: methods for filtering genes from microarray experiments
  • GenomicRanges Representation and manipulation of genomic intervals
  • ggplot2 An implementation of the Grammar of Graphics
  • ghyp A package on the generalized hyperbolic distribution and its special cases
  • glmmML Generalized linear models with clustering
  • gmm Generalized Method of Moments and Generalized Empirical Likelihood
  • gogarch Generalized Orthogonal GARCH (GO-GARCH) models
  • GPArotation GPA Factor Rotation
  • gplots Various R programming tools for plotting data
  • graphics The R Graphics Package
  • grDevices The R Graphics Devices and Support for Colours and Fonts
  • grid The Grid Graphics Package
  • gss General Smoothing Splines
  • gtable Arrange grobs in tables.
  • gtools Various R programming tools
  • hdrcde Highest density regions and conditional density estimation
  • highfrequency highfrequency
  • Hmisc Harrell Miscellaneous
  • ibdreg Regression Methods for IBD Linkage With Covariates
  • IBrokers R API to Interactive Brokers Trader Workstation
  • illuminaio Parsing Illumina microarray output files
  • ineq Measuring Inequality, Concentration, and Poverty
  • intReg Interval Regression
  • IRanges Infrastructure for manipulating intervals on sequences
  • ismev An Introduction to Statistical Modeling of Extreme Values
  • iterators Iterator construct for R
  • itertools Iterator Tools
  • its Irregular Time Series
  • Kendall Kendall rank correlation and Mann-Kendall trend test
  • KernSmooth Functions for kernel smoothing for Wand & Jones (1995)
  • ks Kernel smoothing
  • labeling Axis Labeling
  • lambda.r Functional programming in R
  • LARF LARF: Local Average Response Functions for Estimating Treatment Effects
  • lattice Lattice Graphics
  • LearnBayes Functions for Learning Bayesian Inference
  • lfe Linear Group Fixed Effects
  • lifecontingencies A package to perform actuarial mathematics for life contingencies insurances
  • limma Linear Models for Microarray Data
  • lme4 Linear mixed-effects models using S4 classes
  • Lmoments L-moments and quantile mixtures
  • lmtest Testing Linear Regression Models
  • locfit Local Regression, Likelihood and Density Estimation.
  • longmemo Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions
  • lumi BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
  • maps Draw Geographical Maps
  • maptools Tools for reading and handling spatial objects
  • maRketSim Market simulator for R
  • MASS Support Functions and Datasets for Venables and Ripley's MASS
  • matlab MATLAB emulation package
  • Matrix Sparse and Dense Matrix Classes and Methods
  • matrixcalc Collection of functions for matrix calculations
  • matrixStats Methods that apply to rows and columns of a matrix
  • maxLik Maximum Likelihood Estimation
  • mclust Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation
  • Mcomp Data from the M-competitions
  • meboot Maximum Entropy Bootstrap for Time Series
  • methods Formal Methods and Classes
  • methylumi Handle Illumina methylation data
  • mFilter Miscellaneous time series filters
  • mgcv Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation
  • mhurdle Estimation of models with limited dependent variables
  • micEcon Microeconomic Analysis and Modelling
  • micEconAids Demand Analysis with the Almost Ideal Demand System (AIDS)
  • micEconCES Analysis with the Constant Elasticity of Scale (CES) function
  • micEconSNQ P Symmetric Normalized Quadratic Profit Function
  • minfi Analyze Illumina's 450k methylation arrays
  • minpack.lm R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK, plus support for bounds
  • minqa Derivative-free optimization algorithms by quadratic approximation
  • misc3d Miscellaneous 3D Plots
  • miscTools Miscellaneous Tools and Utilities
  • mlogit multinomial logit model
  • mnormt The multivariate normal and t distributions
  • MNP R Package for Fitting the Multinomial Probit Model
  • modeltools Tools and Classes for Statistical Models
  • moments Moments, cumulants, skewness, kurtosis and related tests
  • MSBVAR Markov-Switching, Bayesian, Vector Autoregression Models
  • multtest Resampling-based multiple hypothesis testing
  • munsell Munsell colour system
  • mvProbit Multivariate Probit Models
  • mvtnorm Multivariate Normal and t Distributions
  • nleqslv Solve systems of non linear equations
  • nlme Linear and Nonlinear Mixed Effects Models
  • nloptr R interface to NLopt
  • NMOF Numerical Methods and Optimization in Finance
  • nnet Feed-forward Neural Networks and Multinomial Log-Linear Models
  • nor1mix Normal (1-d) Mixture Models (S3 Classes and Methods)
  • np Nonparametric kernel smoothing methods for mixed data types
  • numDeriv Accurate Numerical Derivatives
  • odesolve Solvers for Ordinary Differential Equations
  • opefimor Option Pricing and Estimation of Financial Models in R
  • ordinal Regression Models for Ordinal Data
  • org.Hs.eg.db Genome wide annotation for Human
  • pa Performance Attribution for Equity Portfolios
  • PairTrading classical pair trading based on cointegration in finance
  • parallel Support for Parallel computation in R
  • parma Portfolio Allocation and Risk Management Applications
  • partsm Periodic Autoregressive Time Series Models
  • pbivnorm Vectorized Bivariate Normal CDF
  • pcse Panel-Corrected Standard Error Estimation in R
  • PerformanceAnalytics Econometric tools for performance and risk analysis.
  • pkgmaker Package development utilities
  • plm Linear Models for Panel Data
  • plyr Tools for splitting, applying and combining data
  • polspline Polynomial spline routines
  • polynom A collection of functions to implement a class for univariate polynomial manipulations
  • portfolio Analysing equity portfolios
  • portfolioSim Framework for simulating equity portfolio strategies
  • POT Generalized Pareto Distribution and Peaks Over Threshold
  • preprocessCore A collection of pre-processing functions
  • proto Prototype object-based programming
  • pscl Political Science Computational Laboratory, Stanford University
  • pspline Penalized Smoothing Splines
  • pwt Penn World Table
  • quadprog Functions to solve Quadratic Programming Problems.
  • quantmod Quantitative Financial Modelling Framework
  • quantreg Quantile Regression
  • Rcgmin Conjugate gradient minimization of nonlinear functions with box constraints
  • Rcmdr R Commander
  • RColorBrewer ColorBrewer palettes
  • Rcpp Seamless R and C++ Integration
  • RcppArmadillo Rcpp integration for Armadillo templated linear algebra library
  • registry Registry infrastructure
  • reldist Relative Distribution Methods
  • reshape Flexibly reshape data.
  • reshape2 Flexibly reshape data: a reboot of the reshape package.
  • rgl 3D visualization device system (OpenGL)
  • Rglpk R/GNU Linear Programming Kit Interface
  • R.methodsS3 Utility function for defining S3 methods
  • rms Regression Modeling Strategies
  • RMTstat Distributions, Statistics and Tests derived from Random Matrix Theory
  • rngtools Utility functions for working with Random Number Generators
  • robustbase Basic Robust Statistics
  • rpart Recursive Partitioning
  • RSGHB Functions for Hierarchical Bayesian Estimation: A Flexible Approach
  • Rsolnp General Non-linear Optimization
  • RSQLite SQLite interface for R
  • rugarch Univariate GARCH models
  • RUnit R Unit test framework
  • rwt Rice Wavelet Toolbox wrapper
  • sampleSelection Sample Selection Models
  • sandwich Robust Covariance Matrix Estimators
  • scales Scale functions for graphics.
  • schwartz97 A package on the Schwartz two-factor commodity model
  • sde Simulation and Inference for Stochastic Differential Equations
  • segmented Segmented relationships in regression models with breakpoints/changepoints estimation
  • sem Structural Equation Models
  • setRNG Set (Normal) Random Number Generator and Seed
  • sets Sets, Generalized Sets, Customizable Sets and Intervals
  • shape Functions for plotting graphical shapes, colors
  • siggenes Multiple testing using SAM and Efron's empirical Bayes approaches
  • simpleboot Simple Bootstrap Routines
  • slam Sparse Lightweight Arrays and Matrices
  • sn The skew-normal and skew-t distributions
  • snow Simple Network of Workstations
  • sp classes and methods for spatial data
  • spam SPArse Matrix
  • SparseM Sparse Linear Algebra
  • spatial Functions for Kriging and Point Pattern Analysis
  • spatialprobit Spatial Probit Models
  • spd Semi Parametric Distribution
  • spdep Spatial dependence: weighting schemes, statistics and models
  • sphet Spatial Models with heteroskedastic innovations
  • splines Regression Spline Functions and Classes
  • splm Econometric Models for Spatial Panel Data
  • stabledist Stable Distribution Functions
  • statmod Statistical Modeling
  • stats The R Stats Package
  • stats4 Statistical Functions using S4 Classes
  • stochvol Efficient Bayesian Inference for Stochastic Volatility (SV) Models
  • stockPortfolio Build stock models and analyze stock portfolios.
  • stringr Make it easier to work with strings.
  • strucchange Testing, Monitoring, and Dating Structural Changes
  • survival Survival Analysis
  • systemfit Estimating Systems of Simultaneous Equations
  • tawny Provides various portfolio optimization strategies including random matrix theory and shrinkage estimators
  • tawny.types Common types for tawny
  • tcltk Tcl/Tk Interface
  • termstrc Zero-coupon Yield Curve Estimation
  • tfplot Time Frame User Utilities
  • tframe Time Frame coding kernel
  • TFX R API to TrueFX(tm)
  • timeDate Rmetrics - Chronological and Calendar Objects
  • timeSeries Rmetrics - Financial Time Series Objects
  • timsac TIMe Series Analysis and Control package
  • tis Time Indexes and Time Indexed Series
  • tkrplot TK Rplot
  • tmvtnorm Truncated Multivariate Normal and Student t Distribution
  • tools Tools for Package Development
  • truncnorm Truncated normal distribution
  • truncreg Truncated Regression Models
  • TSdbi TSdbi (Time Series Database Interface)
  • tsDyn Nonlinear time series models with regime switching
  • tseries Time series analysis and computational finance
  • tseriesChaos Analysis of nonlinear time series
  • tsfa Time Series Factor Analysis
  • TTR Technical Trading Rules
  • ttrTests Standard Backtests for Technical Trading Rules in Financial Data
  • tweedie Tweedie exponential family models
  • ucminf General-purpose unconstrained non-linear optimization
  • urca Unit root and cointegration tests for time series data
  • utils The R Utils Package
  • vars VAR Modelling
  • VarSwapPrice Pricing a variance swap on an equity index
  • vcd Visualizing Categorical Data
  • VGAM Vector Generalized Linear and Additive Models
  • vrtest Variance Ratio tests and other tests for Martigale Difference Hypothesis
  • wavelets A package of functions for computing wavelet filters, wavelet transforms and multiresolution analyses
  • waveslim Basic wavelet routines for one-, two- and three-dimensional signal processing
  • wavethresh Wavelets statistics and transforms.
  • XM L Tools for parsing and generating XML within R and S-Plus.
  • xtable Export tables to LaTeX or HTML
  • xts eXtensible Time Series
  • XVector Representation and manpulation of external sequences
  • YieldCurve Modelling and estimation of the yield curve
  • Zelig Everyone's Statistical Software
  • zlibbioc An R packaged zlib-1.2.5
  • zoo S3 Infrastructure for Regular and Irregular Time Series (Z's ordered observations)
  • AnnotationDbi
  • base
  • base64enc
  • BatchJobs
  • BBmisc
  • Biobase
  • BiocGenerics
  • BiocInstaller
  • BiocParallel
  • biomaRt
  • Biostrings
  • bitops
  • boot
  • brew
  • BSgenome
  • Cairo
  • caTools
  • checkmate
  • chron
  • class
  • cluster
  • codetools
  • compiler
  • data.table
  • datasets
  • DBI
  • digest
  • edgeR
  • fail
  • flexmix
  • foreach
  • foreign
  • GenomeInfoDb
  • GenomicAlignments
  • GenomicFeatures
  • GenomicRanges
  • graphics
  • grDevices
  • grid
  • htmltools
  • httpuv
  • IRanges
  • iterators
  • KernSmooth
  • lattice
  • limma
  • MASS
  • Matrix
  • methods
  • mgcv
  • modeltools
  • multicore
  • nlme
  • nnet
  • parallel
  • plyr
  • RColorBrewer
  • Rcpp
  • RcppArmadillo
  • RCurl
  • reshape2
  • RJSONIO
  • rpart
  • Rsamtools
  • RSQLite
  • rtracklayer
  • scde
  • sendmailR
  • shiny
  • spatial
  • splines
  • stats
  • stats4
  • stringr
  • survival
  • tcltk
  • tools
  • utils
  • XML
  • xtable
  • XVector
  • zlibbioc
  • acepack
  • affy
  • affyio
  • airway
  • annotate
  • AnnotationDbi
  • base
  • base64enc
  • BatchJobs
  • BBmisc
  • Biobase
  • BiocGenerics
  • BiocInstaller
  • BiocParallel
  • BiocStyle
  • biomaRt
  • Biostrings
  • bitops
  • boot
  • brew
  • BSgenome
  • BSgenome.Celegans.UCSC.ce2
  • BSgenome.Dmelanogaster.UCSC.dm3
  • BSgenome.Hsapiens.UCSC.hg19
  • BSgenome.Hsapiens.UCSC.hg19.masked
  • BSgenome.Rnorvegicus.UCSC.rn5
  • Cairo
  • caTools
  • checkmate
  • chron
  • class
  • cluster
  • codetools
  • colorspace
  • compiler
  • datasets
  • data.table
  • DBI
  • DESeq
  • DESeq2
  • devtools
  • dichromat
  • DiffBend
  • digest
  • doParallel
  • DynDoc
  • edgeR
  • evaluate
  • fail
  • FDb.UCSC.tRNAs
  • flexmix
  • foreach
  • foreign
  • formatR
  • Formula
  • gdata
  • genefilter
  • geneplotter
  • GenomeInfoDb
  • GenomicAlignments
  • GenomicFeatures
  • GenomicRanges
  • GEOquery
  • ggplot2
  • GO.db
  • gplots
  • graph
  • graphics
  • grDevices
  • grid
  • gtable
  • gtools
  • hgu95av2.db
  • hgu95av2probe
  • highr
  • Hmisc
  • hom.Hs.inp.db
  • htmltools
  • httpuv
  • httr
  • humanCHRLOC
  • hwriter
  • IRanges
  • iterators
  • jsonlite
  • KernSmooth
  • knitr
  • labeling
  • lattice
  • latticeExtra
  • limma
  • locfit
  • maptools
  • markdown
  • MASS
  • Matrix
  • memoise
  • methods
  • mgcv
  • mime
  • modeltools
  • munsell
  • nlme
  • nnet
  • org.Hs.eg.db
  • org.Mm.eg.db
  • org.Rn.eg.db
  • parallel
  • parathyroidSE
  • pasilla
  • pasillaBamSubset
  • plyr
  • preprocessCore
  • proto
  • quantreg
  • R6
  • rae230a.db
  • rae230obe
  • RBGL
  • RColorBrewer
  • Rcpp
  • RcppArmadillo
  • RCurl
  • reshape2
  • Rgraphviz
  • RInside
  • rjson
  • RJSONIO
  • RNAseqData.HNRNPC.bam.chr14
  • Rook
  • roxygen2
  • rpart
  • Rsamtools
  • RSQLite
  • rstudioapi
  • rtracklayer
  • RUnit
  • S4Vectors
  • scales
  • scde
  • sendmailR
  • shiny
  • ShortRead
  • snow
  • SNPlocs.Hsapiens.dbSNP.20100427
  • sp
  • SparseM
  • spatial
  • splines
  • SRAdb
  • statmod
  • stats
  • stats4
  • stringr
  • survival
  • tcltk
  • testthat
  • tools
  • translations
  • TxDb.Dmelanogaster.UCSC.dm3.ensGene
  • TxDb.Hsapiens.UCSC.hg19.knownGene
  • utils
  • vsn
  • whisker
  • XML
  • xtable
  • XVector
  • yeastNagalakshmi
  • zlibbioc
  • A3
  • a4
  • a4Base
  • a4Classif
  • a4Core
  • a4Preproc
  • a4Reporting
  • abbyyR
  • abc
  • ABCanalysis
  • abc.data
  • ABCoptim
  • abctools
  • abd
  • abf2
  • abind
  • ABSSeq
  • abundant
  • acc
  • accelerometry
  • AcceptanceSampling
  • ACCLMA
  • accrued
  • ACD
  • acepack
  • aCGH
  • acid
  • acm4r
  • ACME
  • acnr
  • acopula
  • acp
  • aCRM
  • acs
  • acss
  • acss.data
  • ACTCD
  • Actigraphy
  • activity
  • actuar
  • ActuDistns
  • ada
  • adabag
  • adagio
  • adaptDA
  • AdaptFit
  • AdaptFitOS
  • AdaptiveSparsity
  • adaptivetau
  • adaptMCMC
  • adaptsmoFMRI
  • adaptTest
  • additivityTests
  • addreg
  • ADDT
  • ade4
  • adegenet
  • adegraphics
  • adehabitatHR
  • adehabitatHS
  • adehabitatLT
  • adehabitatMA
  • adephylo
  • AdequacyModel
  • ADGofTest
  • adhoc
  • adimpro
  • adlift
  • ADM3
  • AdMit
  • ADPclust
  • ads
  • adSplit
  • adwave
  • aemo
  • AER
  • afex
  • affxparser
  • affy
  • affycomp
  • AffyCompatible
  • affyContam
  • affycoretools
  • affydata
  • AffyExpress
  • affyILM
  • affyio
  • affypdnn
  • affyPLM
  • affyQCReport
  • AffyRNADegradation
  • AffyTiling
  • AFLPsim
  • aftgee
  • AGD
  • AGDEX
  • agilp
  • AgiMicroRna
  • agop
  • Agreement
  • agricolae
  • agridat
  • agrmt
  • AGSDest
  • agsemisc
  • ahaz
  • AHR
  • AICcmodavg
  • AID
  • aidar
  • AIM
  • AIMS
  • Ake
  • akima
  • akmeans
  • alabama
  • ald
  • ALDEx2
  • ALDqr
  • AlgDesign
  • algstat
  • ALKr
  • ALL
  • allan
  • allanvar
  • alleHap
  • allelematch
  • AlleleRetain
  • allelic
  • AllelicImbalance
  • AllPossibleSpellings
  • alm
  • alphahull
  • alphaOutlier
  • alphashape3d
  • alr3
  • alr4
  • ALS
  • alsace
  • ALSCPC
  • altcdfenvs
  • ALTopt
  • amap
  • AMAP.Seq
  • amei
  • Amelia
  • amen
  • AmericanCallOpt
  • AMGET
  • aml
  • AMOEBA
  • AMORE
  • AmpliconDuo
  • ampliQueso
  • anacor
  • analogue
  • analogueExtra
  • AnalysisPageServer
  • analyz
  • anametrix
  • anapuce
  • AncestryMapper
  • anchors
  • AnDE
  • andrews
  • anesrake
  • anfis
  • AnglerCreelSurveySimulation
  • animalTrack
  • animation
  • anim.plots
  • annaffy
  • annmap
  • annotate
  • AnnotationDbi
  • AnnotationForge
  • AnnotationFuncs
  • AnnotationHub
  • annotationTools
  • anominate
  • anota
  • Anthropometry
  • antiProfiles
  • antitrust
  • AntWeb
  • aod
  • aods3
  • AOfamilies
  • aoos
  • ApacheLogProcessor
  • apc
  • apcluster
  • apComplex
  • ape
  • apex
  • aplore3
  • appell
  • apple
  • AppliedPredictiveModeling
  • approximator
  • aprean3
  • aprof
  • APSIMBatch
  • apsimr
  • apsrtable
  • apTreeshape
  • aqp
  • aqr
  • AquaEnv
  • AR1seg
  • ArArRedux
  • archdata
  • archetypes
  • archiDART
  • archivist
  • ArDec
  • arfima
  • ArfimaMLM
  • argosfilter
  • argparse
  • argparser
  • ArgumentCheck
  • arm
  • arnie
  • aroma.affymetrix
  • aroma.apd
  • aroma.core
  • aroma.light
  • ARPobservation
  • aRpsDCA
  • arqas
  • ArrayExpress
  • ArrayExpressHTS
  • arrayhelpers
  • arrayMvout
  • arrayQuality
  • arrayQualityMetrics
  • ArrayTools
  • ArrayTV
  • ARRmData
  • ARRmNormalization
  • ars
  • ARTIVA
  • ARTool
  • ARTP
  • arules
  • arulesNBMiner
  • arulesSequences
  • arulesViz
  • aRxiv
  • ascii
  • asd
  • ASEB
  • ASGSCA
  • ash
  • ASMap
  • aspace
  • ASPBay
  • aspect
  • aSPU
  • asremlPlus
  • assertive
  • assertr
  • assertthat
  • ASSET
  • AssetPricing
  • ASSIGN
  • assist
  • AssocTests
  • AssotesteR
  • aster
  • aster2
  • astro
  • astrochron
  • astrodatR
  • astroFns
  • astrolibR
  • astsa
  • asVPC
  • asympTest
  • AsynchLong
  • asypow
  • ATE
  • AtlasRDF
  • atmcmc
  • ATmet
  • AtmRay
  • atsd
  • attract
  • attribrisk
  • AUC
  • AUCRF
  • audio
  • audiolyzR
  • audit
  • autoencoder
  • automap
  • autopls
  • AutoSEARCH
  • autovarCore
  • awsMethods
  • aylmer
  • B2Z
  • b6e6rl
  • babar
  • BaBooN
  • babynames
  • BAC
  • BACCO
  • backtest
  • BACprior
  • BADER
  • BAEssd
  • Bagidis
  • bagRboostR
  • BAGS
  • BalancedSampling
  • ballgown
  • BaM
  • BAMMtools
  • bamsignals
  • bandit
  • BANFF
  • barcode
  • bartMachine
  • base
  • base64
  • base64enc
  • baseline
  • BaseSpaceR
  • Basic4Cseq
  • basicspace
  • BASIX
  • BaSTA
  • BAT
  • batade
  • batch
  • BatchExperiments
  • BatchJobs
  • batchmeans
  • BayClone2
  • BayesBridge
  • BayesCR
  • BayesDA
  • bayesDccGarch
  • BayesFactor
  • bayesGARCH
  • bayesGDS
  • BayesGESM
  • BayesianAnimalTracker
  • Bayesianbetareg
  • BayesLCA
  • bayesLife
  • BayesLogit
  • bayesm
  • bayesMCClust
  • BayesMixSurv
  • BayesNI
  • BayesPeak
  • bayesPop
  • bayespref
  • bayesQR
  • bayess
  • BayesSingleSub
  • BayesSummaryStatLM
  • bayesSurv
  • bayesTFR
  • Bayesthresh
  • BayesTree
  • BayesValidate
  • BayesX
  • BayesXsrc
  • BayHap
  • BayHaz
  • BaylorEdPsych
  • bayou
  • baySeq
  • BAYSTAR
  • BB
  • bbefkr
  • bbemkr
  • BBEST
  • BBmisc
  • bbmle
  • BBMM
  • bbo
  • BBRecapture
  • bc3net
  • BCBCSF
  • BCDating
  • BCE
  • BCEA
  • BCEE
  • BCEs0
  • Bchron
  • Bclim
  • bclust
  • bcp
  • bcpa
  • bcpmeta
  • BCRA
  • BCRANK
  • bcrm
  • bcrypt
  • bcv
  • bda
  • bde
  • BDgraph
  • bdpv
  • bdscale
  • bdsmatrix
  • bdvis
  • bdynsys
  • beadarray
  • beadarraySNP
  • BeadDataPackR
  • beanplot
  • BEANSP
  • BEAT
  • BEclear
  • BEDASSLE
  • beepr
  • beeswarm
  • benchden
  • benchmark
  • Benchmarking
  • benford.analysis
  • BenfordTests
  • bentcableAR
  • ber
  • Bergm
  • BerlinData
  • berryFunctions
  • bestglm
  • betafam
  • betapart
  • betaper
  • betareg
  • betas
  • betategarch
  • bethel
  • betr
  • bezier
  • bfa
  • bfast
  • bfp
  • bgafun
  • bgeva
  • bglm
  • BGLR
  • BGmix
  • bgmm
  • BGPhazard
  • BGSIMD
  • bgx
  • BH
  • Bhat
  • BHC
  • BHH2
  • biasbetareg
  • BiasedUrn
  • bibtex
  • BicARE
  • biclust
  • BiDimRegression
  • bifactorial
  • bigalgebra
  • biganalytics
  • bigdata
  • BIGDAWG
  • biglars
  • biglm
  • bigmemory
  • bigmemoryExtras
  • bigmemory.sri
  • bigml
  • bigpca
  • bigrf
  • bigrquery
  • bigRR
  • bigsplines
  • bigtabulate
  • BigTSP
  • bild
  • bimetallic
  • Binarize
  • BinaryEPPM
  • binda
  • bindata
  • binequality
  • bingat
  • binGroup
  • binhf
  • binMto
  • BinNonNor
  • BinNor
  • binom
  • binomialcftp
  • binomlogit
  • binomSamSize
  • binomTools
  • BinOrdNonNor
  • binr
  • binseqtest
  • bio3d
  • bioassayR
  • Biobase
  • BiocCaseStudies
  • BiocCheck
  • BiocGenerics
  • biocGraph
  • BiocInstaller
  • BiocParallel
  • BiocStyle
  • biocViews
  • Biodem
  • bioDist
  • biogas
  • BioGeoBEARS
  • biogram
  • Biograph
  • biom
  • BioMark
  • biomaRt
  • biomod2
  • BIOM.utils
  • BioMVCClass
  • biomvRCNS
  • BioNet
  • bionetdata
  • BioPhysConnectoR
  • bioPN
  • biorxivr
  • bios2mds
  • BioSeqClass
  • biosignalEMG
  • BioStatR
  • Biostrings
  • biosvd
  • biovizBase
  • bipartite
  • BIPOD
  • BiRewire
  • birk
  • birta
  • birte
  • bisectr
  • BiSeq
  • bisoreg
  • bit
  • bit64
  • bitops
  • BitSeq
  • bivarRIpower
  • biwavelet
  • biwt
  • bizdays
  • bladderbatch
  • BlakerCI
  • BlandAltmanLeh
  • Blaunet
  • blender
  • blighty
  • blima
  • blkergm
  • blm
  • blme
  • blmeco
  • blockcluster
  • blockmatrix
  • BlockMessage
  • blockmodeling
  • blockmodels
  • blockrand
  • blocksdesign
  • blockTools
  • blowtorch
  • BLR
  • blsAPI
  • BMA
  • bmd
  • BMhyd
  • Bmix
  • bmk
  • bmmix
  • BMN
  • bmp
  • bmrm
  • BMS
  • BNDataGenerator
  • bnlearn
  • bnormnlr
  • BNPdensity
  • BNPTSclust
  • boa
  • BOG
  • boilerpipeR
  • BOIN
  • bold
  • Bolstad
  • Bolstad2
  • boolean3
  • BoolNet
  • boostr
  • boostSeq
  • boot
  • bootES
  • bootLR
  • BootPR
  • bootRes
  • bootruin
  • bootspecdens
  • bootsPLS
  • bootStepAIC
  • bootstrap
  • bootSVD
  • boottol
  • Boruta
  • BoSSA
  • boussinesq
  • boxplotdbl
  • boxr
  • bpca
  • bpcp
  • bPeaks
  • bpkde
  • bqtl
  • BradleyTerry2
  • BrailleR
  • BRAIN
  • brainR
  • BrainStars
  • brainwaver
  • breakage
  • breakaway
  • breakpoint
  • breastCancerVDX
  • bReeze
  • brew
  • brewdata
  • brglm
  • bride
  • bridge
  • BridgeDbR
  • brms
  • brnn
  • Brobdingnag
  • broman
  • broom
  • BrowserViz
  • BrowserVizDemo
  • BSagri
  • BSDA
  • BSgenome
  • BSgenome.Celegans.UCSC.ce2
  • BSgenome.Drerio.UCSC.danRer7
  • BSgenome.Ecoli.NCBI.20080805
  • BSgenome.Hsapiens.UCSC.hg19
  • BSGS
  • BSGW
  • bshazard
  • BsMD
  • bspec
  • bspmma
  • BSquare
  • BSSasymp
  • bsseq
  • bst
  • BTYD
  • BubbleTree
  • BufferedMatrix
  • BufferedMatrixMethods
  • bujar
  • bumphunter
  • BurStFin
  • BurStMisc
  • bursts
  • BUS
  • bvarsv
  • bvenn
  • bvls
  • bvpSolve
  • BVS
  • c060
  • c3net
  • C50
  • ca
  • cabootcrs
  • cacIRT
  • CaDENCE
  • CADFtest
  • CAGEr
  • cAIC4
  • Cairo
  • CALIB
  • CALIBERrfimpute
  • calibrate
  • calibrator
  • CAM
  • CAMAN
  • camel
  • cancerclass
  • CancerMutationAnalysis
  • cancerTiming
  • CAnD
  • candisc
  • cape
  • caper
  • capushe
  • capwire
  • car
  • CARBayes
  • CARBayesdata
  • CARBayesST
  • carcass
  • cardidates
  • Cardinal
  • care
  • CARE1
  • caret
  • caretEnsemble
  • caribou
  • CarletonStats
  • CARLIT
  • caroline
  • caschrono
  • caseMatch
  • casper
  • cat
  • catdata
  • CatDyn
  • Category
  • categoryCompare
  • catenary
  • CateSelection
  • cati
  • catIrt
  • catnet
  • caTools
  • catR
  • catspec
  • causaleffect
  • CausalFX
  • CausalGAM
  • causalsens
  • Causata
  • CAvariants
  • cba
  • CBPS
  • CCA
  • CCAGFA
  • ccaPP
  • cccd
  • ccChooser
  • cccp
  • cccrm
  • ccda
  • ccgarch
  • cchs
  • cclust
  • CCM
  • CCP
  • CCpop
  • ccrepe
  • cda
  • cdb
  • cdcsis
  • CDFt
  • CDLasso
  • CDM
  • CDNmoney
  • CDVine
  • CEC
  • cec2005benchmark
  • cec2013
  • CEGO
  • celestial
  • cellGrowth
  • cellHTS
  • cellHTS2
  • CellNOptR
  • cellranger
  • CellularAutomaton
  • cellVolumeDist
  • censNID
  • censReg
  • CensRegMod
  • cents
  • CEoptim
  • CePa
  • cepp
  • CerioliOutlierDetection
  • cernn
  • CexoR
  • cfa
  • CFAssay
  • CFC
  • CfEstimateQuantiles
  • cg
  • cgam
  • cgAUC
  • cgdsr
  • CGEN
  • cggd
  • cgh
  • CGHbase
  • CGHcall
  • cghFLasso
  • cghMCR
  • CGHnormaliter
  • CGHregions
  • cghseg
  • CGP
  • cgwtools
  • ChainLadder
  • ChAMP
  • ChAMPdata
  • changepoint
  • ChargeTransport
  • charm
  • CHCN
  • cheb
  • chebpol
  • CheckDigit
  • checkmate
  • checkpoint
  • cheddar
  • chemCal
  • ChemmineR
  • chemometrics
  • ChemometricsWithR
  • ChemometricsWithRData
  • chemosensors
  • ChemoSpec
  • cherry
  • childsds
  • chillR
  • chimera
  • chipenrich
  • chipenrich.data
  • chipPCR
  • ChIPpeakAnno
  • ChIPQC
  • ChIPseeker
  • chipseq
  • ChIPseqR
  • ChIPsim
  • ChIPXpress
  • ChIPXpressData
  • chngpt
  • CHNOSZ
  • choiceDes
  • ChoiceModelR
  • choplump
  • chopsticks
  • chopthin
  • chords
  • choroplethr
  • choroplethrAdmin1
  • choroplethrMaps
  • chroGPS
  • chromDraw
  • chromer
  • ChromHeatMap
  • chromoR
  • chron
  • CHsharp
  • CIDnetworks
  • CIFsmry
  • cin
  • CINID
  • CINOEDV
  • CircE
  • circlize
  • CircNNTSR
  • CircOutlier
  • CircStats
  • circular
  • cisPath
  • citbcmst
  • citccmst
  • CityPlot
  • cjoint
  • Ckmeans.1d.dp
  • Claddis
  • cladoRcpp
  • class
  • classifly
  • ClassifyR
  • classInt
  • classyfire
  • cleanUpdTSeq
  • cleaver
  • clere
  • clhs
  • ClickClust
  • clickstream
  • clifro
  • ClimClass
  • climdex.pcic
  • clime
  • climwin
  • clinfun
  • clinsig
  • clinUtiDNA
  • clippda
  • clipper
  • clisymbols
  • CLME
  • clogitL1
  • Clomial
  • Clonality
  • clonotypeR
  • cloudUtil
  • CLSOCP
  • clst
  • clstutils
  • clue
  • ClueR
  • clues
  • cluster
  • clusterCrit
  • cluster.datasets
  • clustergas
  • clusterGeneration
  • clusterGenomics
  • clustering.sc.dp
  • clusterPower
  • clusterProfiler
  • clusterRepro
  • clusterSEs
  • clusterSim
  • clusterStab
  • clustertend
  • clusteval
  • ClustGeo
  • clustMD
  • ClustMMDD
  • ClustOfVar
  • clustrd
  • clustsig
  • ClustVarLV
  • clustvarsel
  • clv
  • clValid
  • CMA
  • cmaes
  • cMAP
  • cMap2data
  • CMC
  • CMF
  • cmm
  • CMPControl
  • CMplot
  • cmprsk
  • cmrutils
  • cmvnorm
  • cna
  • CNAnorm
  • CNEr
  • cn.farms
  • cn.mops
  • CNOGpro
  • CNORdt
  • CNORfeeder
  • CNORfuzzy
  • CNORode
  • CNprep
  • CNTools
  • CNVassoc
  • CNVassocData
  • cnvGSA
  • CNVtools
  • coalescentMCMC
  • coarseDataTools
  • COBRA
  • cobs
  • cobs99
  • CoCiteStats
  • cocor
  • cocorresp
  • cocron
  • coda
  • codadiags
  • cOde
  • codelink
  • codep
  • codetools
  • CODEX
  • coefficientalpha
  • coefplot
  • coenocliner
  • coexist
  • CoGAPS
  • cogena
  • coGPS
  • COHCAP
  • COHCAPanno
  • coin
  • CoinMinD
  • cold
  • CollocInfer
  • coloc
  • coloredICA
  • colorfulVennPlot
  • ColorPalette
  • colorRamps
  • colorspace
  • colortools
  • colourlovers
  • comato
  • combinat
  • CombinePValue
  • CombinS
  • CombMSC
  • comclim
  • cometExactTest
  • commandr
  • commentr
  • CommonJavaJars
  • commonmark
  • CommonTrend
  • CommT
  • COMMUNAL
  • CommunityCorrelogram
  • Comp2ROC
  • compactr
  • compare
  • compareC
  • CompareCausalNetworks
  • compareGroups
  • compareODM
  • CompareTests
  • comparison
  • COMPASS
  • compeir
  • compEpiTools
  • CompGLM
  • CompGO
  • compHclust
  • compiler
  • Compind
  • ComplexAnalysis
  • ComplexHeatmap
  • complmrob
  • CompLognormal
  • compoisson
  • COMPoissonReg
  • compositions
  • compound.Cox
  • Compounding
  • CompQuadForm
  • CompR
  • CompRandFld
  • compute.es
  • Conake
  • ConConPiWiFun
  • concor
  • concreg
  • cond
  • condGEE
  • condmixt
  • condMVNorm
  • CondReg
  • coneproj
  • conf.design
  • conformal
  • confreq
  • conics
  • conjoint
  • ConjointChecks
  • ConnMatTools
  • ConsensusClusterPlus
  • ConSpline
  • contfrac
  • conting
  • contrast
  • controlTest
  • conumee
  • ConvCalendar
  • convert
  • convevol
  • cooccur
  • cooptrees
  • copa
  • COPASutils
  • copBasic
  • copCAR
  • cope
  • Copula.Markov
  • CopulaREMADA
  • CopyDetect
  • CopyhelpeR
  • copynumber
  • CopyNumber450k
  • CopyNumber450kCancer
  • CopywriteR
  • corclass
  • corcounts
  • CORE
  • CoRegNet
  • CORElearn
  • coreNLP
  • coreTDT
  • corHMM
  • Cormotif
  • CorMut
  • coRNAi
  • corpcor
  • corpora
  • CorrBin
  • CorReg
  • correlate
  • Correlplot
  • CORREP
  • corrgram
  • CorrMixed
  • corrplot
  • corrsieve
  • corTools
  • COSINE
  • cosinor
  • cosmoFns
  • CosmoPhotoz
  • cosmosR
  • COSNet
  • costat
  • cotrend
  • couchDB
  • COUNT
  • countrycode
  • CountsEPPM
  • covLCA
  • covr
  • covreg
  • covRobust
  • CovSel
  • covTest
  • cowplot
  • CoxBoost
  • coxinterval
  • coxme
  • Coxnet
  • coxphf
  • coxphw
  • CoxRidge
  • coxrobust
  • coxsei
  • CP
  • cpca
  • CPE
  • CpGassoc
  • CpGFilter
  • CPHshape
  • cpk
  • cplm
  • cpm
  • CPMCGLM
  • Cprob
  • cpvSNP
  • cqn
  • cqrReg
  • cquad
  • CR
  • CRAC
  • crackR
  • cramer
  • crank
  • cranlogs
  • crantastic
  • crawl
  • crayon
  • crblocks
  • crch
  • CreditMetrics
  • crimCV
  • crimelinkage
  • CRISPRseek
  • crlmm
  • CRM
  • crn
  • crossdes
  • crossmatch
  • Crossover
  • crossReg
  • crossval
  • crp.CSFP
  • crqa
  • crrp
  • crrSC
  • crrstep
  • crs
  • CRTSize
  • crunch
  • csampling
  • CSAR
  • csaw
  • cSFM
  • cshapes
  • cslogistic
  • csn
  • csrplus
  • csSAM
  • CSSP
  • cstar
  • csvread
  • ctc
  • cts
  • CTT
  • ctv
  • cubature
  • cubfits
  • Cubist
  • cudaBayesregData
  • cudia
  • cummeRbund
  • CUMP
  • cumplyr
  • cumSeg
  • curl
  • currentSurvival
  • curvetest
  • cusp
  • customProDB
  • cutoffR
  • cuttlefish.model
  • cvAUC
  • CVcalibration
  • cvplogistic
  • cvq2
  • CVST
  • CVThresh
  • cvTools
  • CVTuningCov
  • cvxbiclustr
  • cvxclustr
  • cwhmisc
  • cwm
  • cxxfunplus
  • cycloids
  • cyphid
  • cytoDiv
  • d3heatmap
  • d3Network
  • DAAG
  • DAAGxtras
  • dae
  • daewr
  • dafs
  • dagbag
  • dagR
  • Daim
  • DAISIE
  • DAKS
  • daMA
  • DAMisc
  • DAMOCLES
  • dams
  • DandEFA
  • darch
  • Dark
  • DART
  • darts
  • dashboard
  • DASiR
  • DatABEL
  • datacheck
  • DataCombine
  • dataframes2xls
  • datalist
  • datamap
  • datamart
  • dataQualityR
  • dataRetrieval
  • datasets
  • datastepr
  • data.table
  • data.tree
  • datautils
  • dataview
  • date
  • DATforDCEMRI
  • dave
  • DAVIDQuery
  • Davies
  • dawai
  • DBChIP
  • dbConnect
  • dbEmpLikeGOF
  • dbEmpLikeNorm
  • DBGSA
  • DBI
  • dblcens
  • dbmss
  • db.r
  • dbstats
  • dcemriS4
  • DCL
  • dclone
  • DCluster
  • dcmr
  • dcv
  • ddalpha
  • ddCt
  • DDD
  • ddeploy
  • ddgraph
  • DDHFm
  • DDIwR
  • ddst
  • deal
  • deamer
  • decctools
  • DECIDE
  • DECIPHER
  • decisionSupport
  • decode
  • decompr
  • decon
  • DeconRNASeq
  • DEDS
  • Deducer
  • DeducerExtras
  • DeducerPlugInExample
  • DeducerPlugInScaling
  • DeducerSurvival
  • DeducerText
  • deducorrect
  • deepnet
  • DEEPR
  • deepSNV
  • degenes
  • DEGraph
  • degreenet
  • DEGseq
  • Delaporte
  • deldir
  • delt
  • deltaGseg
  • deltaPlotR
  • Demerelate
  • DEMEtics
  • deming
  • demography
  • demoKde
  • dendextend
  • dendextendRcpp
  • dendroextras
  • DendSer
  • dendsort
  • denovolyzeR
  • denpro
  • densityClust
  • Density.T.HoldOut
  • denstrip
  • DEoptim
  • DEoptimR
  • depend.truncation
  • depmix
  • depmixS4
  • depth
  • DepthProc
  • depthTools
  • dequer
  • derfinder
  • derfinderHelper
  • derfinderPlot
  • Deriv
  • descomponer
  • descr
  • DescribeDisplay
  • DescTools
  • deseasonalize
  • DESeq
  • DESeq2
  • designGG
  • desiR
  • desirability
  • desire
  • DESnowball
  • deSolve
  • detect
  • deTestSet
  • DetMCD
  • DetSel
  • devEMF
  • Devore7
  • devtools
  • DEXSeq
  • dexus
  • df2json
  • dfcrm
  • dfexplore
  • DFIT
  • dfoptim
  • DFP
  • dga
  • dglars
  • dglm
  • dgof
  • dhglm
  • diagonals
  • diagram
  • DiagrammeR
  • DiagTest3Grp
  • diaplt
  • dice
  • DiceDesign
  • DiceEval
  • DiceKriging
  • DiceOptim
  • DiceView
  • dichromat
  • dicionariosIBGE
  • dielectric
  • DiffBind
  • diffdepprop
  • diffEq
  • diffGeneAnalysis
  • diffHic
  • diffIRT
  • diffractometry
  • diffusionMap
  • DIFlasso
  • difR
  • DIFtree
  • digest
  • diggit
  • Digiroo2
  • digitalPCR
  • dils
  • DIME
  • dinamic
  • diptest
  • DIRECT
  • directlabels
  • directPA
  • DirichletReg
  • dirmult
  • Disake
  • disclap
  • disclapmix
  • DiscML
  • DiscreteInverseWeibull
  • DiscreteLaplace
  • discreteMTP
  • discreteRV
  • DiscreteWeibull
  • discretization
  • discrimARTs
  • DiscriMiner
  • discSurv
  • diseasemapping
  • dismo
  • disp2D
  • disparityfilter
  • displayHTS
  • dispmod
  • disposables
  • dissUtils
  • Distance
  • DistatisR
  • distcomp
  • distfree.cr
  • distillery
  • distory
  • distr
  • distrDoc
  • distrEllipse
  • distrEx
  • DistributionUtils
  • distrMod
  • distrom
  • distrRmetrics
  • distrSim
  • distrTeach
  • distrTEst
  • diveMove
  • DiversitySampler
  • dixon
  • dkDNA
  • dks
  • dlm
  • dlmap
  • dlmodeler
  • DLMtool
  • dlnm
  • dma
  • dmm
  • dMod
  • DMR
  • DMRcaller
  • DMRcate
  • DMRcatedata
  • DMRforPairs
  • dmt
  • DMwR
  • dna
  • DNAcopy
  • DNAprofiles
  • DNAtools
  • DnE
  • DNMF
  • DOBAD
  • doBy
  • docopt
  • documair
  • DO.db
  • Dodge
  • DoE.base
  • DoE.wrapper
  • domainsignatures
  • doMC
  • Dominance
  • domino
  • doParallel
  • DOQTL
  • doRedis
  • doRNG
  • DOSE
  • DoseFinding
  • doSNOW
  • dosresmeta
  • dostats
  • dotenv
  • DoubleCone
  • DoubleExpSeq
  • DOvalidation
  • downloader
  • dpcR
  • dpglasso
  • dplR
  • dplRCon
  • dplyr
  • dpmixsim
  • dpmr
  • DPpackage
  • DPw
  • dr
  • drat
  • drawExpression
  • drc
  • drgee
  • DriverNet
  • drm
  • drmdel
  • dropR
  • DrugVsDisease
  • DrugVsDiseasedata
  • ds
  • dsample
  • DSBayes
  • dse
  • DSL
  • dslice
  • dsm
  • DSS
  • DSsim
  • dst
  • DStree
  • DSviaDRM
  • DT
  • DTA
  • DTComPair
  • DTDA
  • DTK
  • DTMCPack
  • DTR
  • dtt
  • dtw
  • dualKS
  • dualScale
  • dummies
  • dummy
  • DunnettTests
  • dunn.test
  • DupChecker
  • dupiR
  • dvfBm
  • DVHmetrics
  • dvn
  • dyebias
  • dygraphs
  • DYM
  • dyn
  • DynamicDistribution
  • dynamicTreeCut
  • dynaTree
  • DynClust
  • dynCorr
  • DynDoc
  • dynia
  • dynlm
  • DynNom
  • dynRB
  • dynsim
  • dynsurv
  • DynTxRegime
  • e1071
  • eaf
  • earlywarnings
  • earth
  • EasyABC
  • easyanova
  • EasyHTMLReport
  • easynls
  • easyRNASeq
  • EasyStrata
  • eba
  • ebal
  • EBarrays
  • EbayesThresh
  • EBcoexpress
  • ebdbNet
  • EBEN
  • ebGenotyping
  • EBglmnet
  • EBMAforecast
  • EBS
  • EBSeq
  • EBSeqHMM
  • ebSNP
  • Ecdat
  • ecespa
  • Ecfun
  • ecipex
  • eco
  • ecodist
  • ecoengine
  • EcoHydRology
  • ecolitk
  • ecolMod
  • ecoreg
  • ecoretriever
  • ecosim
  • EcoSimR
  • ecospat
  • EcoTroph
  • ecoval
  • EDASeq
  • edcc
  • EDDA
  • edeR
  • edge
  • edgeR
  • EDISON
  • EditImputeCont
  • editrules
  • EDR
  • edrGraphicalTools
  • eegAnalysis
  • eegkit
  • eegkitdata
  • eeptools
  • EFDR
  • EffectLiteR
  • effects
  • EffectsRelBaseline
  • EffectStars
  • EffectTreat
  • effsize
  • ega
  • egcm
  • eggCounts
  • egonet
  • EGRET
  • eha
  • eHOF
  • EIAdata
  • eigeninv
  • eigenmodel
  • eigenprcomp
  • EILA
  • eiPack
  • eisa
  • eive
  • eiwild
  • EL
  • elastic
  • elasticnet
  • ELBOW
  • elec
  • elec.strat
  • ElemStatLearn
  • elliplot
  • ellipse
  • elliptic
  • elmNN
  • EloRating
  • elrm
  • ElstonStewart
  • ELT
  • ELYP
  • embryogrowth
  • EMC
  • EMCC
  • EMCluster
  • EMD
  • emdbook
  • emdist
  • EMDomics
  • emg
  • emil
  • emIRT
  • emma
  • EMMAgeo
  • emme2
  • EMMIXcontrasts
  • EMMIXskew
  • EMMIXuskew
  • EMMREML
  • emoa
  • emov
  • EMP
  • emplik
  • emplik2
  • EMT
  • emulator
  • EMVC
  • enaR
  • ENCODExplorer
  • endogMNP
  • endorse
  • energy
  • english
  • EngrExpt
  • enigma
  • ENMeval
  • ENmisc
  • ENmix
  • enpls
  • enrichvs
  • ensembldb
  • EnsembleBase
  • ensembleBMA
  • EnsembleCV
  • ensembleMOS
  • EnsemblePCReg
  • EnsemblePenReg
  • ensemblVEP
  • ensurer
  • entropart
  • entropy
  • EntropyEstimation
  • EntropyExplorer
  • enviPat
  • enviPick
  • EnviroStat
  • ENVISIONQuery
  • EnvNicheR
  • EnvStats
  • epade
  • Epi
  • epibasix
  • EpiBayes
  • EpiContactTrace
  • epiDisplay
  • EpiDynamics
  • EpiEstim
  • epigenomix
  • EpiModel
  • epinet
  • epiR
  • episensr
  • episplineDensity
  • epitools
  • epivizr
  • Eplot
  • epr
  • EQL
  • eqs2lavaan
  • eqtl
  • equate
  • equateIRT
  • equivalence
  • erboost
  • erccdashboard
  • erer
  • ergm
  • ergm.count
  • ergm.graphlets
  • ergmharris
  • ergm.userterms
  • eRm
  • ERP
  • ES
  • esaBcv
  • ESEA
  • ESG
  • ESGtoolkit
  • EstCRM
  • estimability
  • estout
  • EstSimPDMP
  • etable
  • ETAS
  • etasFLP
  • ETC
  • ETLUtils
  • etm
  • eurostat
  • EvalEst
  • evaluate
  • Evapotranspiration
  • EvCombR
  • evd
  • evdbayes
  • eventInterval
  • events
  • eventstudies
  • evir
  • evobiR
  • evolqg
  • evolvability
  • EvoRAG
  • evt0
  • evtree
  • EW
  • EWGoF
  • Exact
  • exact2x2
  • exactci
  • ExactCIdiff
  • exactLoglinTest
  • exactmeta
  • ExactPath
  • exactRankTests
  • exams
  • ExceedanceTools
  • exCon
  • excursions
  • ExiMiR
  • exomeCopy
  • exomePeak
  • expands
  • ExpDes
  • ExpDes.pt
  • expectreg
  • experiment
  • expert
  • expm
  • expoRkit
  • ExPosition
  • expoTree
  • ExpressionView
  • expsmooth
  • exptest
  • exsic
  • ExtDist
  • extfunnel
  • extlasso
  • extraBinomial
  • extrafont
  • extrafontdb
  • extraTrees
  • ExtremeBounds
  • extRemes
  • extWeibQuant
  • eyetracking
  • ez
  • ezglm
  • ezsim
  • fabia
  • facopy
  • facopy.annot
  • FacPad
  • factDesign
  • FactMixtAnalysis
  • FactoClass
  • FactoMineR
  • factorplot
  • factorQR
  • FACTscorer
  • factualR
  • FADA
  • FAdist
  • Fahrmeir
  • fail
  • faisalconjoint
  • falcon
  • falsy
  • fame
  • Familias
  • FAMILY
  • FAmle
  • fanc
  • fANCOVA
  • fanovaGraph
  • fanplot
  • FAOSTAT
  • far
  • faraway
  • fArma
  • farms
  • farsi
  • fAsianOptions
  • fAssets
  • fast
  • fastclime
  • fastcluster
  • fastcox
  • fastGHQuad
  • fastHICA
  • fastICA
  • FastImputation
  • FastKNN
  • fastLiquidAssociation
  • fastM
  • fastmatch
  • fastpseudo
  • fastR
  • FastRWeb
  • fastseg
  • fastSOM
  • fat2Lpoly
  • FatTailsR
  • fBasics
  • FBFsearch
  • FBN
  • fBonds
  • fbRanks
  • fbroc
  • fcd
  • fCertificates
  • fclust
  • FCMapper
  • fCopulae
  • fcros
  • FD
  • fda
  • fdakma
  • fdaMixed
  • fdasrvf
  • fdatest
  • fda.usc
  • FDb.InfiniumMethylation.hg19
  • FDboost
  • FDGcopulas
  • fdrci
  • FDRreg
  • fdrtool
  • fds
  • fdth
  • FeaLect
  • features
  • fechner
  • federalregister
  • FEM
  • fermicatsR
  • fExoticOptions
  • fExpressCertificates
  • fExtremes
  • ff
  • ffbase
  • FField
  • ffmanova
  • ffpe
  • fgac
  • FGalgorithm
  • fGarch
  • FGN
  • FGNet
  • fgof
  • fgpt
  • FGSG
  • fheatmap
  • FI
  • fibroEset
  • fICA
  • fields
  • FieldSim
  • fifer
  • filehash
  • filehashSQLite
  • filematrix
  • filenamer
  • fImport
  • financial
  • FinancialInstrument
  • FinAsym
  • FinCal
  • FinCovRegularization
  • FindAllRoots
  • FindIt
  • FindMinIC
  • findpython
  • fingerprint
  • finiteruinprob
  • FinTS
  • FisherEM
  • FisHiCal
  • fishmethods
  • fishMod
  • fishmove
  • FitAR
  • FitARMA
  • fitbitScraper
  • fitdistrplus
  • fitDRC
  • fit.models
  • FITSio
  • fitTetra
  • FKF
  • flam
  • flare
  • flashClust
  • flexclust
  • flexmix
  • FlexParamCurve
  • flexPM
  • flexsurv
  • FLIM
  • flip
  • flipflop
  • FLLat
  • flora
  • flowBeads
  • flowBin
  • flowCL
  • flowClean
  • flowClust
  • flowCore
  • flowCyBar
  • flowDensity
  • flower
  • flowfield
  • flowFP
  • flowMap
  • flowMatch
  • flowPlots
  • flowQ
  • flowQB
  • FlowRepositoryR
  • FlowSOM
  • flowTrans
  • flowUtils
  • flowViz
  • FLR
  • flsa
  • FLSSS
  • FluOMatic
  • Flury
  • flux
  • fma
  • fmcsR
  • FME
  • fmri
  • fmsb
  • FMStable
  • fmt
  • fMultivar
  • FNN
  • fNonlinear
  • foba
  • focalCall
  • fontcm
  • foodweb
  • fOptions
  • forams
  • foreach
  • ForeCA
  • forecast
  • forecTheta
  • foreign
  • forensic
  • forestFloor
  • forestplot
  • ForImp
  • ForIT
  • FormalSeries
  • formatR
  • Formula
  • formula.tools
  • fortunes
  • forward
  • ForwardSearch
  • fossil
  • FourCSeq
  • FourScores
  • fpc
  • fpca
  • fpCompare
  • FPDclustering
  • fpow
  • fpp
  • fptdApprox
  • fracdiff
  • fracprolif
  • fractal
  • fractaldim
  • FractalParameterEstimation
  • fractalrock
  • FRACTION
  • frailtyHL
  • frailtypack
  • frair
  • Frames2
  • FRB
  • frbs
  • FRCC
  • freeknotsplines
  • FreeSortR
  • freestats
  • fRegression
  • FREQ
  • freqMAP
  • freqparcoord
  • freqweights
  • FRESA.CAD
  • FrF2
  • FrF2.catlg128
  • FRGEpistasis
  • frm
  • frma
  • frmaTools
  • frmhet
  • frmpd
  • frontier
  • frontiles
  • frt
  • fscaret
  • FSelector
  • fsia
  • fslr
  • fso
  • FTICRMS
  • ftnonpar
  • fTrading
  • fts
  • ftsa
  • fueleconomy
  • fugeR
  • fun
  • FunciSNP
  • FunciSNP.data
  • FunCluster
  • Funclustering
  • FuncMap
  • functional
  • funFEM
  • funHDDC
  • fUnitRoots
  • funreg
  • funtimes
  • FusedPCA
  • futile.any
  • futile.logger
  • futile.matrix
  • futile.options
  • futile.paradigm
  • future
  • fuzzyFDR
  • FuzzyNumbers
  • fuzzyRankTests
  • FuzzyStatProb
  • FuzzyToolkitUoN
  • fwdmsa
  • FWDselect
  • fwi.fbp
  • fwsim
  • fxregime
  • G1DBN
  • G2Sd
  • GA
  • GA4Stratification
  • GAabbreviate
  • GABi
  • GAD
  • GaDiFPT
  • gaga
  • gage
  • gaggle
  • gaia
  • gains
  • GAIPE
  • galts
  • gam
  • gamair
  • gambin
  • GAMBoost
  • gamboostLSS
  • gamboostMSM
  • gamclass
  • games
  • GameTheory
  • gamlr
  • gamlss
  • gamlss.add
  • gamlss.cens
  • gamlss.data
  • gamlss.dist
  • gamlss.mx
  • gamlss.nl
  • gamlss.spatial
  • gamlss.tr
  • gamlss.util
  • gamm4
  • Gammareg
  • gammSlice
  • gamsel
  • GANPA
  • GANPAdata
  • gaoptim
  • gap
  • gapmap
  • gapminder
  • GAR
  • gaselect
  • gaucho
  • gaussDiff
  • gaussquad
  • gazepath
  • gb
  • GB2
  • gbm
  • gbm2sas
  • gbRd
  • GCAI.bias
  • gCat
  • gcbd
  • GCD
  • gcdnet
  • gclus
  • gCMAP
  • gCMAPWeb
  • gconcord
  • gcookbook
  • GCPM
  • gcrma
  • gcspikelite
  • GDAdata
  • gdalUtils
  • gdata
  • g.data
  • GDAtools
  • GDELTtools
  • gdistance
  • gdm
  • gdsfmt
  • gee
  • geecc
  • geeM
  • geepack
  • geesmv
  • geigen
  • geiger
  • gelnet
  • gems
  • gemtc
  • gemtc.jar
  • GenABEL
  • GenABEL.data
  • genalg
  • genasis
  • GenBinomApps
  • GenCAT
  • gendata
  • gender
  • genderizeR
  • GeneAnswers
  • GENEAread
  • GeneCycle
  • GENE.E
  • GeneExpressionSignature
  • GeneF
  • GeneFeST
  • genefilter
  • genefu
  • GeneGA
  • geneLenDataBase
  • geneListPie
  • GeneMeta
  • GeneNet
  • GeneNetworkBuilder
  • GeneOverlap
  • genepi
  • geneplotter
  • GeneralizedHyperbolic
  • geneRecommender
  • GeneReg
  • GeneRegionScan
  • geneRxCluster
  • GeneSelectMMD
  • GeneSelector
  • geneSignatureFinder
  • geNetClassifier
  • genetics
  • GeneticsDesign
  • GeneticsPed
  • GeneticSubsetter
  • GenForImp
  • GenKern
  • genlasso
  • GENLIB
  • genMOSS
  • genMOSSplus
  • genoCN
  • genomation
  • GenomeGraphs
  • GenomeInfoDb
  • genomeIntervals
  • genomes
  • GenomicAlignments
  • GenomicFeatures
  • GenomicFiles
  • GenomicInteractions
  • GenomicRanges
  • GenomicTuples
  • Genominator
  • genoPlotR
  • GenOrd
  • genoset
  • GenoView
  • genpathmox
  • genridge
  • GenSA
  • gensemble
  • genSurv
  • GenWin
  • geo
  • geoBayes
  • geocodeHERE
  • GeoDE
  • GeoGenetix
  • GeoLight
  • GEOmap
  • geomapdata
  • GEOmetadb
  • geometry
  • geomorph
  • geonames
  • geophys
  • GEOquery
  • geoscale
  • geosphere
  • geostatsp
  • GEOsubmission
  • geotools
  • geozoo
  • gespeR
  • GESTr
  • getopt
  • GetoptLong
  • GetR
  • gets
  • gettingtothebottom
  • GEVcdn
  • GEVStableGarch
  • GEWIST
  • GGally
  • GGBase
  • ggbio
  • ggdendro
  • ggenealogy
  • ggExtra
  • GGIR
  • gglasso
  • ggm
  • ggmap
  • ggmcmc
  • GGMselect
  • ggparallel
  • ggplot2
  • ggRandomForests
  • ggROC
  • ggsubplot
  • ggswissmaps
  • ggtern
  • ggthemes
  • GGtools
  • ggvis
  • GHQp
  • ghyp
  • GibbsACOV
  • gibbs.met
  • GIGrvg
  • GillespieSSA
  • gIPFrm
  • girafe
  • giRaph
  • gistr
  • git2r
  • Giza
  • glarma
  • glasso
  • glba
  • glcm
  • gld
  • GLDEX
  • gldist
  • GLDreg
  • glinternet
  • gllm
  • glm2
  • glmc
  • glmdm
  • glmgraph
  • glmlep
  • glmm
  • glmmBUGS
  • glmmGS
  • glmmLasso
  • glmmML
  • glmnet
  • glmnetcr
  • glmpath
  • glmpathcr
  • glmulti
  • glmvsd
  • glmx
  • GlobalAncova
  • globalboosttest
  • GlobalDeviance
  • GlobalFit
  • globalGSA
  • GlobalOptions
  • globalOptTests
  • globals
  • globaltest
  • glogis
  • glrt
  • GLSME
  • gmailr
  • gmapR
  • GMCM
  • gMCP
  • GMD
  • GMDH
  • Gmisc
  • gmm
  • GMMBoost
  • gmnl
  • gmodels
  • gmp
  • gmt
  • gMWT
  • GNE
  • gnm
  • gnmf
  • gnumeric
  • goalprog
  • GO.db
  • GOexpress
  • gof
  • GoFKernel
  • goft
  • goftest
  • GOFunction
  • gogarch
  • golubEsets
  • GoogleGenomics
  • googlesheets
  • googleVis
  • GOplot
  • goProfiles
  • goric
  • GOSemSim
  • goseq
  • GOSim
  • GOstats
  • GOsummaries
  • GOTHiC
  • goTools
  • govStatJPN
  • gpairs
  • GPareto
  • GPArotation
  • GPC
  • gPCA
  • gpclib
  • GPCSIV
  • gPdtest
  • GPFDA
  • GPfit
  • gpk
  • gplm
  • gplots
  • gpls
  • GPLTR
  • gpmap
  • gpr
  • gprege
  • gProfileR
  • GPseq
  • gptk
  • GPvam
  • gQTLBase
  • gQTLstats
  • gquad
  • grade
  • GRaF
  • gramEvol
  • GRANBase
  • granova
  • granovaGG
  • gRapfa
  • graph
  • GraphAlignment
  • GraphAT
  • graphics
  • graphicsQC
  • graphite
  • GraphPAC
  • GraphPCA
  • GrassmannOptim
  • gRbase
  • grDevices
  • GRENITS
  • greport
  • GreyListChIP
  • greyzoneSurv
  • grid
  • gridBase
  • gridExtra
  • gridGraphics
  • gridSVG
  • GriegSmith
  • grImport
  • grndata
  • grnn
  • groc
  • grofit
  • groHMM
  • grouped
  • groupRemMap
  • growcurves
  • growfunctions
  • growthmodels
  • growthrate
  • grplasso
  • grppenalty
  • grpreg
  • grt
  • GRTo
  • GSA
  • gsalib
  • GSAR
  • gsarima
  • gsbDesign
  • GSCA
  • gsDesign
  • GSE
  • GSEABase
  • GSEAlm
  • gSeg
  • gset
  • gsg
  • gsheet
  • gskat
  • GSM
  • gsmoothr
  • GSReg
  • GSRI
  • gss
  • gsscopu
  • gstat
  • gsubfn
  • GSVA
  • gsw
  • gtable
  • gtcorr
  • gte
  • gtools
  • gtop
  • gtrellis
  • gtx
  • GuardianR
  • Guerry
  • GUILDS
  • GUIProfiler
  • gumbel
  • GUniFrac
  • GUTS
  • gvc
  • gvcm.cat
  • Gviz
  • gvlma
  • GWAF
  • gwascat
  • GWASExactHW
  • gwerAM
  • GWG
  • gWidgets
  • gWidgets2
  • GWLelast
  • GWmodel
  • GWRM
  • gwrr
  • GWsignif
  • GxM
  • h2o
  • h5vc
  • h5vcData
  • haarfisz
  • HadoopStreaming
  • hamlet
  • HandTill2001
  • Hankel
  • hapassoc
  • HapEstXXR
  • hapFabia
  • HAPim
  • Haplin
  • haplo.ccs
  • HaploSim
  • haplo.stats
  • haplotypes
  • HAP.ROR
  • HardyWeinberg
  • HarmonicRegression
  • Harshlight
  • harvestr
  • hash
  • hashFunction
  • haven
  • hawkes
  • hazus
  • hbim
  • hbm
  • hbmem
  • hbsae
  • HBSTM
  • hcc
  • hcci
  • hcp
  • HCsnip
  • hda
  • HDclassif
  • hdeco
  • hdi
  • hdlm
  • HDMD
  • HDPenReg
  • hdrcde
  • HDTD
  • HDtweedie
  • HEAT
  • heatex
  • heatmap3
  • heatmapFit
  • heatmap.plus
  • Heatplus
  • heavy
  • helloJavaWorld
  • HELP
  • HelpersMG
  • helsinki
  • HEM
  • heplots
  • hergm
  • heritability
  • hermite
  • hett
  • het.test
  • hexbin
  • hexView
  • hflights
  • hgam
  • hglasso
  • hglm
  • hglm.data
  • hgm
  • HGNChelper
  • hgu133a2.db
  • hgu133a.db
  • hgu133plus2.db
  • hgu95av2.db
  • HHG
  • hht
  • HI
  • hiAnnotator
  • HIBAG
  • HiClimR
  • hiddenf
  • HiddenMarkov
  • HiDimDA
  • hierband
  • hierDiversity
  • hierfstat
  • hierNet
  • hier.part
  • hiertest
  • HIest
  • highD2pop
  • HighDimOut
  • highfrequency
  • highlight
  • highr
  • highTtest
  • HilbertVis
  • hillmakeR
  • HiLMM
  • hint
  • hiPOD
  • hiReadsProcessor
  • hisemi
  • hisse
  • HistData
  • HistDAWass
  • histmdl
  • histogram
  • historydata
  • hitandrun
  • HiTC
  • hive
  • HIV.LifeTables
  • HK80
  • HLMdiag
  • HLSM
  • hmeasure
  • Hmisc
  • HMM
  • HMMCont
  • HMMcopy
  • hmm.discnp
  • hmmm
  • HMMpa
  • HMP
  • HMPTrees
  • HMR
  • hnp
  • hoa
  • hoardeR
  • holdem
  • Holidays
  • homals
  • homeR
  • Homo.sapiens
  • homtest
  • hopach
  • hornpa
  • hot.deck
  • Hotelling
  • hotspots
  • howmany
  • hpar
  • HPbayes
  • hpcwld
  • hqmisc
  • hqreg
  • hrr
  • HSAUR
  • HSAUR2
  • HSAUR3
  • hSDM
  • hsicCCA
  • hsmm
  • HSMMSingleCell
  • hsphase
  • HSROC
  • HSSVD
  • htmlTable
  • htmltools
  • HTMLUtils
  • htmlwidgets
  • HTqPCR
  • hts
  • HTSanalyzeR
  • HTSeqGenie
  • htSeqTools
  • HTSFilter
  • httk
  • httpRequest
  • httpuv
  • httr
  • huge
  • HUM
  • humanFormat
  • hwde
  • HWEBayes
  • HWEintrinsic
  • HW.pval
  • hwriter
  • hwriterPlus
  • hwwntest
  • HWxtest
  • hybridEnsemble
  • hybridHclust
  • HybridMC
  • HybridMTest
  • hydroApps
  • hydrogeo
  • hydroGOF
  • HydroMe
  • hydroPSO
  • hydrostats
  • hydroTSM
  • HyperbolicDist
  • hyperdirichlet
  • hyperdraw
  • hypergea
  • hypergeo
  • hypergraph
  • hyperSpec
  • hypervolume
  • HyPhy
  • hypothesestest
  • hysteresis
  • hzar
  • IASD
  • iASeq
  • IAT
  • iBATCGH
  • iBBiG
  • ibd
  • IBDhaploRtools
  • IBDLabels
  • ibdreg
  • IBDsim
  • ibelief
  • ibh
  • IBHM
  • Iboot
  • ibr
  • IBrokers
  • iC10
  • iC10TrainingData
  • IC2
  • ica
  • ICAFF
  • icamix
  • icaOcularCorrection
  • icapca
  • ICC
  • iccbeta
  • icd9
  • ICE
  • ICEbox
  • ICEinfer
  • icenReg
  • Icens
  • icensmis
  • ICGE
  • iChip
  • ic.infer
  • iCluster
  • iClusterPlus
  • ICS
  • ICSNP
  • ICsurv
  • icsw
  • idbg
  • identity
  • IdeoViz
  • idiogram
  • idm
  • IdMappingAnalysis
  • IdMappingRetrieval
  • IDPmisc
  • IDPSurvival
  • idr
  • iDynoR
  • ieeeround
  • ifa
  • iFad
  • ifctools
  • IFP
  • ifs
  • ifultools
  • iGasso
  • IgorR
  • igraph
  • igraphdata
  • igraphtosonia
  • ig.vancouver.2014.topcolour
  • ihs
  • iki.dataclim
  • ilc
  • Illumina450ProbeVariants.db
  • IlluminaHumanMethylation450kanno.ilmn12.hg19
  • IlluminaHumanMethylation450kmanifest
  • illuminaio
  • IM
  • Imap
  • imguR
  • IMIS
  • ImpactIV
  • IMPCdata
  • import
  • imprProbEst
  • impute
  • imputeMDR
  • imputeR
  • inarmix
  • IndependenceTests
  • indicoio
  • indicspecies
  • ineq
  • iNEXT
  • InfDim
  • inference
  • InferenceSMR
  • inferference
  • inflection
  • influence.ME
  • infoDecompuTE
  • informR
  • infotheo
  • infra
  • infuser
  • infutil
  • INLABMA
  • inline
  • inlinedocs
  • InPAS
  • InPosition
  • INPower
  • insideRODE
  • inSilicoDb
  • inSilicoMerging
  • insol
  • install.load
  • insuranceData
  • intamap
  • intamapInteractive
  • intansv
  • intcox
  • Interact
  • interactiveDisplay
  • interactiveDisplayBase
  • InteractiveIGraph
  • interAdapt
  • interferenceCI
  • intergraph
  • internetarchive
  • interplot
  • Interpol
  • Interpol.T
  • interpretR
  • InterVA4
  • intervals
  • interventionalDBN
  • IntLik
  • intpoint
  • inTrees
  • intReg
  • intRegGOF
  • introgress
  • intsvy
  • InvariantCausalPrediction
  • InventorymodelPackage
  • inveRsion
  • investr
  • invGauss
  • io
  • iontree
  • iosmooth
  • iPAC
  • ipdmeta
  • ipdw
  • ipfp
  • iplots
  • IPMpack
  • IPPD
  • ipred
  • ips
  • IPSUR
  • IQCC
  • iqLearn
  • irace
  • IRanges
  • iRegression
  • iRepro
  • irlba
  • irr
  • irtoys
  • irtProb
  • irtrees
  • IRTShiny
  • isa2
  • ISBF
  • isdals
  • ISDA.R
  • iSeq
  • isingLenzMC
  • IsingSampler
  • ISLR
  • ismev
  • Iso
  • isobar
  • IsoCI
  • isocir
  • ISOcodes
  • isopam
  • isopat
  • ISOpureR
  • isotone
  • isotonic.pen
  • ISOweek
  • ISwR
  • ITALICSData
  • iteRates
  • iterativeBMA
  • iterativeBMAsurv
  • iterators
  • iterLap
  • iterpc
  • itertools
  • itertools2
  • itree
  • its
  • itsadug
  • itsmr
  • IVAS
  • ivbma
  • ivfixed
  • ivlewbel
  • ivmodel
  • ivpack
  • ivpanel
  • ivprobit
  • iWeigReg
  • jaatha
  • jackstraw
  • JADE
  • JAGUAR
  • james.analysis
  • JASPAR
  • JavaGD
  • JBTools
  • JGL
  • JGR
  • jiebaRD
  • JM
  • JMbayes
  • JMdesign
  • jmetrik
  • Jmisc
  • jmosaics
  • joda
  • Johnson
  • JohnsonDistribution
  • joineR
  • joint.Cox
  • jointDiag
  • jointPm
  • JointRegBC
  • jomo
  • JOP
  • JoSAE
  • jpeg
  • JPSurv
  • jSonarR
  • jsonlite
  • jtrans
  • Julia
  • kappalab
  • kappaSize
  • kaps
  • KATforDCEMRI
  • kcirt
  • KCsmart
  • kdetrees
  • kebabs
  • kedd
  • KEGG.db
  • KEGGdzPathwaysGEO
  • KEGGgraph
  • keggorthology
  • KEGGprofile
  • KEGGREST
  • Kendall
  • kequate
  • kerdiest
  • kergp
  • kernelFactory
  • kernlab
  • KernSmooth
  • KernSmoothIRT
  • keypress
  • KFAS
  • kfigr
  • kimisc
  • kin.cohort
  • kineticF
  • kinfit
  • kinship2
  • kintone
  • kissmig
  • kknn
  • klaR
  • klausuR
  • klin
  • kmc
  • km.ci
  • kmconfband
  • KMDA
  • kmi
  • Kmisc
  • kml
  • kml3d
  • kmlcov
  • kmodR
  • KMsurv
  • knitcitations
  • knitLatex
  • knitr
  • knitrBootstrap
  • knncat
  • knnGarden
  • knnIndep
  • knockoff
  • kobe
  • KODAMA
  • kofnGA
  • KOGMWU
  • kohonen
  • kolmim
  • KoNLP
  • KoNLP_dic
  • koRpus
  • Kpart
  • kpodclustr
  • kriging
  • KrigInv
  • KRLS
  • krm
  • ks
  • kSamples
  • kselection
  • kst
  • ktsolve
  • kulife
  • kwb.hantush
  • kyotil
  • kzft
  • kzs
  • L1pack
  • l2boost
  • labdsv
  • labeledLoop
  • labeling
  • label.switching
  • labeltodendro
  • labstatR
  • laeken
  • laercio
  • LaF
  • laGP
  • Lahman
  • LakeMetabolizer
  • laketemps
  • Lambda4
  • lambda.r
  • lambda.tools
  • lamW
  • landpred
  • languageR
  • lapmix
  • lar
  • LARF
  • lars
  • laser
  • lasso2
  • lassoscore
  • lassoshooting
  • latdiag
  • latentnet
  • Laterality
  • latex2exp
  • lattice
  • latticeDensity
  • latticeExtra
  • LatticeKrig
  • lava
  • lavaan
  • lavaan.survey
  • lava.tobit
  • lawstat
  • lazy
  • lazyData
  • lazyeval
  • lba
  • LBE
  • lbfgs
  • lbfgsb3
  • lbiassurv
  • LCA
  • LCAextend
  • lcd
  • lcda
  • LCFdata
  • lcmm
  • lctools
  • lda
  • LDAvis
  • ldbounds
  • LDcorSV
  • LDheatmap
  • ldlasso
  • LDPD
  • ldr
  • LDRTools
  • LDtests
  • LEA
  • leaderCluster
  • LeafAngle
  • LeafArea
  • leaflet
  • leafletR
  • LEAPFrOG
  • leaps
  • LearnBayes
  • learningr
  • lefse
  • leiv
  • LeLogicielR
  • les
  • lessR
  • lestat
  • lfactors
  • lfe
  • lfstat
  • lga
  • lgarch
  • LGS
  • lgtdl
  • lhs
  • LiblineaR
  • LICORS
  • LICurvature
  • lifecontingencies
  • LifeTables
  • likelihood
  • likelihoodAsy
  • likert
  • LIM
  • limitplot
  • limma
  • limSolve
  • linbin
  • LinCal
  • LindenmayeR
  • LinearizedSVR
  • lineup
  • linkcomm
  • linkim
  • linkR
  • linLIR
  • linprog
  • LINselect
  • lint
  • lintr
  • LiquidAssociation
  • liso
  • lisp
  • lisrelToR
  • list
  • listenv
  • LIStest
  • llama
  • lle
  • lllcrc
  • LLSR
  • lm.beta
  • lm.br
  • lmdme
  • lme4
  • lmec
  • lmeNB
  • lmeNBBayes
  • lmenssp
  • LMERConvenienceFunctions
  • lmerTest
  • lmeSplines
  • LMest
  • lmeVarComp
  • lmf
  • lmfor
  • LMGene
  • lmm
  • lmmlasso
  • lmmot
  • lmms
  • lmodel2
  • lmom
  • lmomco
  • Lmoments
  • lmomRFA
  • lmSupport
  • lmtest
  • LncMod
  • loa
  • localdepth
  • localgauss
  • localsolver
  • LocFDRPois
  • locfit
  • locits
  • Lock5Data
  • locpol
  • lodGWAS
  • loe
  • log4r
  • logbin
  • LogConcDEAD
  • logconcens
  • logcondens
  • logcondens.mode
  • logcondiscr
  • logconPH
  • logging
  • LogicForest
  • logicFS
  • LOGICOIL
  • LogicReg
  • logistf
  • logitchoice
  • LogitNet
  • logitnorm
  • logitT
  • loglognorm
  • logmult
  • LogrankA
  • logspline
  • lokern
  • lol
  • lomb
  • longCatEDA
  • longclust
  • longitudinal
  • longitudinalData
  • longmemo
  • longpower
  • longurl
  • loo
  • loop
  • LoopAnalyst
  • loopr
  • lordif
  • lorec
  • LowMACAAnnotation
  • LowRankQP
  • lpc
  • LPCM
  • LPE
  • LPEadj
  • lpint
  • lpme
  • lpmodeler
  • lpNet
  • lpridge
  • LPS
  • lpSolve
  • lpSolveAPI
  • LPStimeSeries
  • LPTime
  • lqa
  • lqmm
  • lrmest
  • LS2W
  • lsa
  • LSAfun
  • lsbclust
  • LSC
  • LSD
  • lsdv
  • lsgl
  • lshorth
  • lsmeans
  • LSMonteCarlo
  • lspls
  • lsr
  • lss
  • ltbayes
  • ltm
  • ltmle
  • LTPDvar
  • LTR
  • ltsa
  • ltsbase
  • ltsk
  • lubridate
  • luca
  • lucid
  • lumi
  • lumiHumanAll.db
  • Luminescence
  • lunar
  • LungCancerACvsSCCGEO
  • lvm4net
  • LVMMCOR
  • LVSmiRNA
  • lxb
  • lymphclon
  • M3D
  • m4fe
  • maanova
  • maboost
  • MAc
  • macat
  • MAclinical
  • maCorrPlot
  • MAd
  • mada
  • made4
  • mads
  • madsim
  • Maeswrap
  • magic
  • magicaxis
  • magrittr
  • maigesPack
  • mail
  • mailR
  • MAINT.Data
  • makecdfenv
  • makeProject
  • MALDIquant
  • MALDIquantForeign
  • mallet
  • MAMS
  • MAMSE
  • managelocalrepo
  • manifestoR
  • manipulate
  • manta
  • MantelCorr
  • ManyTests
  • Map2NCBI
  • MAPA
  • mapdata
  • mapDK
  • mapfit
  • MapGAM
  • mAPKL
  • MAPLES
  • mapmisc
  • mapplots
  • mapproj
  • maPredictDSC
  • maps
  • mapStats
  • maptools
  • maptpx
  • maptree
  • mAr
  • mar1s
  • marelac
  • marg
  • markdown
  • marked
  • maRketSim
  • markophylo
  • markovchain
  • MarkowitzR
  • marl
  • marqLevAlg
  • marray
  • MARSS
  • maSAE
  • maskBAD
  • MASS
  • MassArray
  • massiR
  • MassSpecWavelet
  • MASSTIMATE
  • MasterBayes
  • MAT
  • MATA
  • matchBox
  • Matching
  • MatchingFrontier
  • matchingMarkets
  • matchingR
  • MatchIt
  • mathgraph
  • matie
  • matlab
  • matpow
  • matR
  • Matrix
  • matrixcalc
  • MatrixEQTL
  • MatrixModels
  • matrixpls
  • matrixStats
  • MATTOOLS
  • MAVIS
  • MAVTgsa
  • MaXact
  • maxent
  • maxLik
  • maxlike
  • MaxPro
  • maxstat
  • MBA
  • MBAmethyl
  • MBASED
  • MBCluster.Seq
  • MBESS
  • mbest
  • MBI
  • mblm
  • MBmca
  • mbmdr
  • mboost
  • mBPCR
  • mc2d
  • MCAPS
  • MCAvariants
  • mcbiopi
  • mcc
  • mcclust
  • mcga
  • mcgibbsit
  • mcGlobaloptim
  • mcheatmaps
  • MChtest
  • mcIRT
  • MCL
  • mcll
  • mclogit
  • mclust
  • mcmc
  • MCMC4Extremes
  • MCMCglmm
  • MCMC.OTU
  • MCMCpack
  • mcmcplots
  • MCMC.qpcr
  • mcmcse
  • mco
  • Mcomp
  • MConjoint
  • MCPAN
  • MCPerm
  • MCPMod
  • mcprofile
  • mcr
  • MCRestimate
  • MCS
  • mcsm
  • McSpatial
  • MCTM
  • mda
  • mdatools
  • mded
  • mdgsa
  • MDM
  • MDPtoolbox
  • mdqc
  • MDR
  • mdscore
  • mdsdt
  • MeasurementError.cor
  • meboot
  • mederrRank
  • medflex
  • mediation
  • medicalrisk
  • MEDIPS
  • MEDME
  • MedOr
  • medSTC
  • mefa
  • mefa4
  • meifly
  • MEIGOR
  • mem
  • memgene
  • memisc
  • memoise
  • MEMSS
  • memuse
  • MergeMaid
  • MeSH.Aca.eg.db
  • MeSH.AOR.db
  • MeSH.Bsu.168.eg.db
  • MeSH.db
  • MeSHDbi
  • MeSH.Hsa.eg.db
  • MeSH.PCR.db
  • meshr
  • MeSHSim
  • MeSH.Syn.eg.db
  • MESS
  • messina
  • meta
  • metaArray
  • MetABEL
  • MetabolAnalyze
  • metabomxtr
  • metacom
  • metafolio
  • metafor
  • metagen
  • metagene
  • metagenomeSeq
  • metahdep
  • metaLik
  • metap
  • MetaPCA
  • metaplus
  • MetaQC
  • metaRNASeq
  • metaSEM
  • metasens
  • metaSeq
  • metaseqR
  • MetaSKAT
  • metatest
  • Metatron
  • meteogRam
  • MetFns
  • MethComp
  • methods
  • Methplot
  • MethTargetedNGS
  • methVisual
  • methyAnalysis
  • MethylAid
  • MethylMix
  • methylMnM
  • methylPipe
  • MethylSeekR
  • methylumi
  • MetNorm
  • Metrics
  • metricsgraphics
  • metRology
  • mets
  • MetStaT
  • mewAvg
  • MExPosition
  • MF
  • MFHD
  • mFilter
  • mfp
  • MfUSampler
  • mfx
  • mgcv
  • MGFM
  • mgpd
  • MGRASTer
  • mgsa
  • MGSDA
  • MHadaptive
  • mhsmm
  • mht
  • mhurdle
  • mi
  • mice
  • micEcon
  • micEconAids
  • micEconCES
  • micEconSNQP
  • MiChip
  • microbenchmark
  • MicroDatosEs
  • micromapST
  • micropan
  • microRNA
  • MicSim
  • midasr
  • MigClim
  • migest
  • migration.indices
  • migui
  • MIICD
  • MIIVsem
  • MILC
  • mime
  • MImix
  • MIMOSA
  • MindOnStats
  • MineICA
  • minerva
  • minet
  • Miney
  • minfi
  • miniCRAN
  • minimax
  • MinimumDistance
  • minpack.lm
  • minPtest
  • minqa
  • minque
  • MInt
  • minxent
  • mipfp
  • MIPHENO
  • MiPP
  • miRada
  • MiRaGE
  • miRNApath
  • miRNAtap
  • MiRSEA
  • Mirsynergy
  • mirt
  • mirtCAT
  • misc3d
  • miscF
  • miscFuncs
  • miscset
  • miscTools
  • missDeaths
  • missForest
  • missMDA
  • MissMech
  • missMethyl
  • MiST
  • mistat
  • mistral
  • MitISEM
  • mitml
  • mitoODE
  • mitoODEdata
  • mitools
  • mix
  • mixAK
  • MixAll
  • mixdist
  • mixedMem
  • MixedTS
  • mixer
  • mixexp
  • mixlm
  • mixlow
  • MixMAP
  • mixOmics
  • mixor
  • mixPHM
  • mixRasch
  • mixreg
  • MixSim
  • mixsmsn
  • mixtNB
  • mixtools
  • mixtox
  • mixture
  • MixtureInf
  • mizer
  • mkde
  • mkin
  • MKLE
  • MKmisc
  • mkssd
  • mlbench
  • MLCIRTwithin
  • MLCM
  • mldr
  • MLDS
  • mlearning
  • MLEcens
  • mlegp
  • mleur
  • mlgt
  • mlica2
  • MLInterfaces
  • MLmetrics
  • mlmmm
  • mlmRev
  • mlogit
  • mlogitBMA
  • MLP
  • mlPhaser
  • mlr
  • MLRMPA
  • MLSeq
  • MM
  • mma
  • mmand
  • mmap
  • mmcm
  • MMDiff
  • mmds
  • mme
  • mmeln
  • mmeta
  • mmm
  • mmm2
  • MMMS
  • mmnet
  • mmod
  • MmPalateMiRNA
  • mmpp
  • MMS
  • mmtfa
  • mnlogit
  • MNM
  • mnormpow
  • mnormt
  • MNP
  • Mobilize
  • MOCCA
  • Modalclust
  • modeest
  • modehunt
  • modelfree
  • ModelGood
  • modelObj
  • modeltools
  • MODISTools
  • modMax
  • modQR
  • modTempEff
  • mogsa
  • MOJOV
  • mokken
  • mombf
  • momentchi2
  • moments
  • Momocs
  • mondate
  • MonetDB.R
  • monitoR
  • monmlp
  • monocle
  • monomvn
  • MonoPoly
  • monreg
  • moonBook
  • moonsun
  • MoPS
  • mopsocd
  • MOrder
  • morgenstemning
  • Morpho
  • morse
  • MorseGen
  • MortalitySmooth
  • mosaic
  • mosaicData
  • mosaics
  • MotifDb
  • motifRG
  • moult
  • mountainplot
  • mousetrack
  • movMF
  • mp
  • mpa
  • MPAgenomics
  • mpath
  • mpcv
  • MPDiR
  • MPFE
  • mph
  • MPINet
  • mplot
  • mpm
  • mpMap
  • mpmcorrelogram
  • mpmi
  • mpoly
  • Mposterior
  • mppa
  • MPSEM
  • mpt
  • MPTinR
  • MPV
  • mQTL
  • mQTL.NMR
  • mra
  • mratios
  • MRCE
  • MRCV
  • mrds
  • mreg
  • MRH
  • MRIaggr
  • mritc
  • mRm
  • MRMR
  • mRMRe
  • MRSP
  • MRsurv
  • MRwarping
  • msa
  • msap
  • msarc
  • msBP
  • MSBVAR
  • msda
  • mseapca
  • MSG
  • MSGFplus
  • msgl
  • msgpackR
  • msgps
  • msir
  • MSIseq
  • msm
  • msme
  • msos
  • MSQC
  • msr
  • MST
  • mstate
  • MSwM
  • mtk
  • MTS
  • mtsdi
  • MUCflights
  • MuFiCokriging
  • MUGAExampleData
  • muhaz
  • muir
  • Mulcom
  • multcomp
  • multcompView
  • MultEq
  • multgee
  • multiAssetOptions
  • multiband
  • multic
  • MultiCNVDetect
  • multicon
  • multicool
  • multigroup
  • MultiLCIRT
  • multilevel
  • multilevelPSA
  • multimark
  • MultiMed
  • MultiMeta
  • multinbmod
  • MultinomialCI
  • multinomRob
  • MultiOrd
  • MultiPhen
  • multiPIM
  • multipleNCC
  • multiplex
  • multipol
  • multirich
  • MultiRR
  • multiscan
  • multisensi
  • multispatialCCM
  • MultiSV
  • multitable
  • multitaper
  • multivator
  • multiway
  • multiwayvcov
  • MultNonParam
  • multtest
  • multxpert
  • muma
  • MuMIn
  • munfold
  • munsell
  • muscle
  • muStat
  • MVA
  • MVar.pt
  • MVB
  • mvbutils
  • mvc
  • MVCClass
  • mvctm
  • mvcwt
  • mvglmmRank
  • mvGST
  • mvinfluence
  • mvmesh
  • mvmeta
  • mvMORPH
  • MVN
  • mvna
  • mvnfast
  • mvngGrAd
  • mvnmle
  • mvnormtest
  • mvnpermute
  • mvoutlier
  • mvProbit
  • mvprpb
  • MVR
  • mvrtn
  • mvsf
  • mvShapiroTest
  • mvSLOUCH
  • mvtmeta
  • mvtnorm
  • mvtsplot
  • mxkssd
  • MXM
  • mycobacrvR
  • mycor
  • myepisodes
  • mygene
  • Myrrix
  • Myrrixjars
  • myTAI
  • mzID
  • mztwinreg
  • nabor
  • NADA
  • nadiv
  • NAM
  • namespace
  • nanop
  • NanoStringNorm
  • NanoStringQCPro
  • NAPPA
  • NarrowPeaks
  • nasaweather
  • nat
  • nat.nblast
  • nat.templatebrains
  • naturalsort
  • nat.utils
  • NB
  • NbClust
  • nbconvertR
  • NBDdirichlet
  • nbpMatching
  • NBPSeq
  • NCA
  • nCal
  • ncappc
  • ncbit
  • nCDunnett
  • ncf
  • ncg
  • NCIgraph
  • NCmisc
  • ncvreg
  • ndl
  • ndtv
  • neariso
  • NeatMap
  • needy
  • NEff
  • negenes
  • neldermead
  • nem
  • neotoma
  • nephro
  • NestedCohort
  • nestedRanksTest
  • netassoc
  • netbenchmark
  • netbiov
  • NetCluster
  • NetComp
  • NetData
  • netgen
  • netgsa
  • nethet
  • NetIndices
  • netmeta
  • NetPathMiner
  • netresponse
  • nets
  • NetSAM
  • NetSim
  • network
  • networkBMA
  • networkD3
  • networkDynamic
  • networkDynamicData
  • networkreporting
  • networksis
  • neural
  • neuralnet
  • NeuralNetTools
  • neuroblastoma
  • neuroim
  • neuRosim
  • Newdistns
  • nFactors
  • nFCA
  • ngram
  • ngramr
  • ngramrr
  • NGScopy
  • ngspatial
  • NHANES
  • NHEMOtree
  • nhlscrapr
  • NHMM
  • NHMSAR
  • NHPoisson
  • nice
  • nicheROVER
  • NightDay
  • Nippon
  • NISTnls
  • NISTunits
  • nleqslv
  • nlme
  • nlmeODE
  • nlmeU
  • nlmrt
  • nloptr
  • NLP
  • NLPutils
  • nlreg
  • NLRoot
  • nls2
  • nlsem
  • nlsMicrobio
  • nlsmsn
  • nlstools
  • NlsyLinks
  • nlt
  • nlts
  • nLTT
  • nlWaldTest
  • nmcdr
  • NMF
  • NMFN
  • NMOF
  • nnet
  • nnlasso
  • nnls
  • nnNorm
  • NNTbiomarker
  • nodeHarvest
  • nodiv
  • noia
  • NOISeq
  • nomclust
  • NominalLogisticBiplot
  • noncensus
  • nondetects
  • nonlinearTseries
  • nonnest2
  • nonparaeff
  • NonpModelCheck
  • nonrandom
  • nontarget
  • nontargetData
  • nopp
  • nor1mix
  • norm
  • NormalGamma
  • NormalLaplace
  • normalp
  • NormPsy
  • NormqPCR
  • NORMT3
  • normtest
  • normwhn.test
  • NORRRM
  • NORTARA
  • nortest
  • nose
  • notifyR
  • novelist
  • noweb
  • Nozzle.R1
  • np
  • nparcomp
  • nparLD
  • NPBayesImpute
  • NPC
  • NPCD
  • NPCirc
  • npcp
  • npde
  • npGSEA
  • NPHMC
  • npIntFactRep
  • nplplot
  • nplr
  • NPMLEcmprsk
  • npmlreg
  • NPMPM
  • npmv
  • NPMVCP
  • nppbib
  • NPS
  • NPsimex
  • npsm
  • npsp
  • npst
  • nscancor
  • NScluster
  • nsga2R
  • nsgp
  • NSM3
  • nsprcomp
  • nsRFA
  • NSUM
  • NTW
  • nucleR
  • nudge
  • nullabor
  • numbers
  • numDeriv
  • numOSL
  • NuPoP
  • nutshell
  • nutshell.audioscrobbler
  • nutshell.bbdb
  • nws
  • nycflights13
  • OAIHarvester
  • oapackage
  • Oarray
  • oaxaca
  • objectProperties
  • objectSignals
  • obliclus
  • obliqueRF
  • oblique.tree
  • obs.agree
  • obsSens
  • oc
  • occ
  • occugene
  • oce
  • OceanView
  • ocedata
  • OCplus
  • ODB
  • odds.converter
  • odeintr
  • odfWeave
  • odfWeave.survey
  • ODMconverter
  • oem
  • oglmx
  • Ohmage
  • OIdata
  • OIsurv
  • OjaNP
  • okmesonet
  • oligo
  • oligoClasses
  • OLIN
  • OLScurve
  • omd
  • omicade4
  • OmicCircos
  • OmicKriging
  • OmicsMarkeR
  • oncomodel
  • Oncotree
  • OneArmPhaseTwoStudy
  • ONETr
  • OneTwoSamples
  • onion
  • onlinePCA
  • onls
  • ontoCAT
  • OOmisc
  • OPDOE
  • opefimor
  • openair
  • opencpu
  • openintro
  • OpenMPController
  • OpenMx
  • openNLP
  • openNLPdata
  • openssl
  • openxlsx
  • operators
  • operator.tools
  • OPI
  • oposSOM
  • ops
  • optAUC
  • optCluster
  • optextras
  • OptHedging
  • optifunset
  • OptimalCutpoints
  • optimbase
  • optimsimplex
  • optimx
  • OptInterim
  • OptionPricing
  • optiRum
  • optiscale
  • optmatch
  • optparse
  • optpart
  • optR
  • optrees
  • orca
  • ORCI
  • orclus
  • ORCME
  • orcutt
  • ordBTL
  • orddom
  • ORDER2PARENT
  • orderbook
  • orderedLasso
  • OrderedList
  • OrdFacReg
  • ordinal
  • ordinalCont
  • ordinalgmifs
  • OrdinalLogisticBiplot
  • OrdLogReg
  • OrdMonReg
  • OrdNor
  • ore
  • OrganismDbi
  • org.Hs.eg.db
  • OrgMassSpecR
  • org.Mm.eg.db
  • orgR
  • org.Sc.sgd.db
  • ORIClust
  • orientlib
  • orloca
  • orloca.es
  • ORMDR
  • oro.dicom
  • oro.nifti
  • oro.pet
  • orQA
  • orsk
  • orthogonalsplinebasis
  • orthopolynom
  • OSAT
  • osDesign
  • osmar
  • OTUbase
  • ouch
  • OutbreakTools
  • OutlierD
  • OutlierDC
  • OutlierDM
  • outliers
  • OutrankingTools
  • OUwie
  • overlap
  • oz
  • P2C2M
  • p2distance
  • p3state.msm
  • pa
  • PAA
  • pacbpred
  • pack
  • packClassic
  • packdep
  • packHV
  • packrat
  • packS4
  • pacman
  • Pade
  • PADOG
  • paf
  • PAFit
  • PAGI
  • PAGWAS
  • paircompviz
  • pairedCI
  • PairedData
  • pairheatmap
  • pairsD3
  • pairwise
  • pairwiseCI
  • palaeoSig
  • paleobioDB
  • paleoMAS
  • paleotree
  • paleoTS
  • palr
  • pamctdp
  • pamm
  • pampe
  • pamr
  • pan
  • pandaR
  • pander
  • panelaggregation
  • panelAR
  • Paneldata
  • PANICr
  • PAnnBuilder
  • panp
  • PANR
  • papeR
  • PAPi
  • parallel
  • ParallelForest
  • parallelize.dynamic
  • parallelMap
  • parallelMCMCcombine
  • parallelML
  • parallelSVM
  • ParamHelpers
  • paramlink
  • paran
  • parboost
  • parcor
  • ParentOffspring
  • ParetoPosStable
  • parfm
  • parfossil
  • parglms
  • parmigene
  • parody
  • parsec
  • parsedate
  • partDSA
  • partialAR
  • partialOR
  • partitionMap
  • partitionMetric
  • partitions
  • partools
  • partsm
  • party
  • partykit
  • parviol
  • PAS
  • pass
  • pastecs
  • pastis
  • PASWR
  • PASWR2
  • patchDVI
  • patchPlot
  • patchSynctex
  • pathdiagram
  • pathifier
  • pathmox
  • PathNet
  • pathological
  • pathRender
  • pathview
  • PatternClass
  • pauwels2014
  • pavo
  • pawacc
  • PAWL
  • paxtoolsr
  • pbapply
  • PBD
  • PBImisc
  • pbivnorm
  • pbkrtest
  • pbo
  • pBrackets
  • pbs
  • PBSddesolve
  • PBSmapping
  • pca3d
  • pcaBootPlot
  • pcaGoPromoter
  • pcalg
  • pcaMethods
  • PCAmixdata
  • pcaPP
  • PCDSpline
  • pcg
  • PCICt
  • pcIRT
  • PCIT
  • pcot2
  • PCovR
  • PCpheno
  • PCPS
  • pcse
  • pdc
  • pdfCluster
  • pdfetch
  • pdInfoBuilder
  • pdist
  • pd.mapping50k.xba240
  • pdmclass
  • pdmod
  • PDQutils
  • pdR
  • PDSCE
  • peacots
  • Peaks
  • pear
  • pearson7
  • PearsonDS
  • PearsonICA
  • pec
  • PECA
  • pedantics
  • PedCNV
  • pedgene
  • pedigree
  • pedigreemm
  • pegas
  • PEIP
  • PEMM
  • penalized
  • penalizedLDA
  • penalizedSVM
  • pencopula
  • pendensity
  • penDvine
  • penMSM
  • pensim
  • peperr
  • peplib
  • pepStat
  • peptider
  • Peptides
  • pepXMLTab
  • pequod
  • perARMA
  • PerFit
  • PerformanceAnalytics
  • performanceEstimation
  • perm
  • PermAlgo
  • PerMallows
  • permute
  • perry
  • persiandictionary
  • perspectev
  • perturb
  • pesticides
  • PET
  • pez
  • PF
  • PFAM.db
  • pgam
  • PGICA
  • pglm
  • pGLS
  • PGM2
  • pgmm
  • PGRdup
  • PGSEA
  • phalen
  • phangorn
  • PharmPow
  • phaseR
  • PhaseType
  • phcfM
  • pheatmap
  • phenability
  • phenex
  • PHENIX
  • phenmod
  • pheno
  • pheno2geno
  • phenology
  • phenoTest
  • PhenStat
  • PHeval
  • phia
  • phmm
  • phonR
  • phonTools
  • phreeqc
  • phtt
  • PhyActBedRest
  • phyclust
  • phylin
  • phylobase
  • phyloclim
  • phylocurve
  • PHYLOGR
  • phyloland
  • phylolm
  • PhyloMeasures
  • phyloseq
  • phylotools
  • phyloTop
  • phyreg
  • PhysicalActivity
  • physiology
  • phytools
  • phytotools
  • piano
  • picante
  • picasso
  • pickgene
  • pid
  • PIGE
  • pingr
  • pint
  • pipe.design
  • pipeR
  • PIPS
  • pitchRx
  • PivotalR
  • pixmap
  • PK
  • pkgDepTools
  • pkgKitten
  • pkgmaker
  • PKI
  • PKPDmodels
  • PKreport
  • pks
  • plan
  • planar
  • planor
  • plantecophys
  • plaqr
  • PlayerRatings
  • plethy
  • plfm
  • plgem
  • plgp
  • plier
  • PLIS
  • plm
  • plmm
  • pln
  • PLordprob
  • plot2groups
  • plot3D
  • plot3Drgl
  • plotMCMC
  • plotmo
  • plotpc
  • PlotRegionHighlighter
  • plotrix
  • plotROC
  • PLPE
  • plRasch
  • PLRModels
  • plrs
  • pls
  • PLSbiplot1
  • plsdepot
  • plsdof
  • plsgenomics
  • plspm
  • plsRbeta
  • plsRglm
  • plugdensity
  • plumbr
  • plus
  • plusser
  • plw
  • plyr
  • pmc
  • pmcgd
  • PMCMR
  • pmlr
  • pmm
  • pmml
  • pmmlTransformations
  • pmr
  • pnf
  • png
  • pnmtrem
  • pnn
  • pocrm
  • podkat
  • pogit
  • PogromcyDanych
  • poibin
  • PoiClaClu
  • poilog
  • pointdensityP
  • pointRes
  • PoisBinNonNor
  • PoisBinOrd
  • PoisBinOrdNonNor
  • PoisBinOrdNor
  • poisDoubleSamp
  • PoisNonNor
  • PoisNor
  • poisson.glm.mix
  • PoissonSeq
  • poistweedie
  • poLCA
  • polidata
  • pollstR
  • polspline
  • polyaAeppli
  • polyapost
  • polyclip
  • polycor
  • polyCub
  • polyester
  • Polyfit
  • polynom
  • PolynomF
  • PolyPatEx
  • polysat
  • polySegratio
  • polySegratioMM
  • polytomous
  • polywog
  • pom
  • Pomic
  • pomp
  • pooh
  • popbio
  • popdemo
  • PopED
  • popgen
  • PopGenKit
  • PopGenome
  • popgraph
  • popKorn
  • poplite
  • popRange
  • popReconstruct
  • popsom
  • PopVar
  • portes
  • portfolio
  • PortfolioAnalytics
  • portfolioSim
  • PortRisk
  • potts
  • PottsUtils
  • powell
  • PoweR
  • Power2Stage
  • powerAnalysis
  • powerGWASinteraction
  • poweRlaw
  • powerMediation
  • powerSurvEpi
  • PowerTOST
  • PP
  • ppcor
  • ppiData
  • ppiStats
  • ppls
  • ppmlasso
  • pps
  • PPtree
  • PPtreeViz
  • pqantimalarials
  • prabclus
  • pracma
  • PracTools
  • prada
  • pragma
  • prais
  • praktikum
  • prc
  • prebs
  • precintcon
  • PREDA
  • predictionet
  • PredictiveRegression
  • predictmeans
  • predmixcor
  • prefmod
  • PReMiuM
  • preprocessCore
  • PresenceAbsence
  • presens
  • preseqR
  • PResiduals
  • prettyGraphs
  • prettyR
  • prettyunits
  • prim
  • primer
  • primerTree
  • primes
  • princurve
  • prinsimp
  • PRISMA
  • PrivateLR
  • prLogistic
  • prob
  • proBAMr
  • probemod
  • probFDA
  • ProbForecastGOP
  • probsvm
  • pROC
  • PROcess
  • procoil
  • ProDenICA
  • prodlim
  • PROFANCY
  • profdpm
  • ProfessR
  • ProfileLikelihood
  • profileModel
  • profileR
  • profr
  • proftools
  • ProgGUIinR
  • prognosticROC
  • progress
  • ProjectTemplate
  • PROMISE
  • propagate
  • PropCIs
  • PropClust
  • prop.comb.RR
  • PROPER
  • PropScrRand
  • prospectr
  • prot2D
  • proteinProfiles
  • proteomicdesign
  • proteomics
  • ProtGenerics
  • proto
  • protoclass
  • protoclust
  • PROTOLIDAR
  • protr
  • protViz
  • provenance
  • proxy
  • PRROC
  • pRSR
  • pryr
  • PSAboot
  • PSAgraphics
  • psbcGroup
  • PSCBS
  • pscl
  • pscore
  • psd
  • psData
  • pse
  • PSEA
  • pseudo
  • psgp
  • pSI
  • PSICQUIC
  • psidR
  • PSM
  • pso
  • pspearman
  • pspline
  • pssm
  • PST
  • PsumtSim
  • psy
  • psych
  • psychometric
  • psychomix
  • psychotools
  • psychotree
  • psyphy
  • psytabs
  • pt
  • PTAk
  • PTE
  • ptinpoly
  • PtProcess
  • ptw
  • PubBias
  • pubmed.mineR
  • PubMedWordcloud
  • pullword
  • puma
  • pumilioR
  • pushoverr
  • pvac
  • pvar
  • pvca
  • pvclass
  • pvclust
  • Pviz
  • PVR
  • pvsR
  • PWMEnrich
  • pwOmics
  • pwr
  • PwrGSD
  • pwt
  • pwt8
  • pxR
  • pxweb
  • pyramid
  • QCA
  • QCA3
  • QCAfalsePositive
  • QCAtools
  • qcc
  • QCGWAS
  • qclust
  • qcmetrics
  • qcr
  • qdap
  • qdapDictionaries
  • qdapRegex
  • qdapTools
  • qdm
  • QDNAseq
  • qgtools
  • qicharts
  • qiimer
  • qlcMatrix
  • qLearn
  • qmap
  • qmethod
  • qmrparser
  • QoLR
  • qpcR
  • qPCR.CT
  • qpcrNorm
  • qpgraph
  • qqman
  • qqtest
  • qrmtools
  • qrng
  • qrnn
  • qrqc
  • QSARdata
  • qtbase
  • qte
  • qtl
  • qtlbook
  • qtlDesign
  • qtlhot
  • qtlmt
  • QTLRel
  • qtpaint
  • qtutils
  • quad
  • quadprog
  • quadrupen
  • qualCI
  • QualInt
  • qualityTools
  • qualV
  • Quandl
  • quantchem
  • quanteda
  • quantification
  • QuantifQuantile
  • quantmod
  • QuantPsyc
  • quantreg
  • quantregForest
  • quantregGrowth
  • quantro
  • quantsmooth
  • quantspec
  • QuantumClone
  • QuartPAC
  • QuasiSeq
  • QuasR
  • questionr
  • queueing
  • QUIC
  • quickpsy
  • quint
  • quipu
  • Quor
  • qusage
  • qvalue
  • qVarSel
  • qvcalc
  • qwraps2
  • QZ
  • R0
  • R1magic
  • R2admb
  • R2BayesX
  • R2Cuba
  • r2d2
  • R2G2
  • R2HTML
  • r2lh
  • R2MLwiN
  • R2OpenBUGS
  • r2stl
  • R2SWF
  • R2WinBUGS
  • R330
  • R3CPET
  • r3Cseq
  • R453Plus1Toolbox
  • R4CDISC
  • R4CouchDB
  • R4dfp
  • R6
  • race
  • RAD
  • radar
  • radiant
  • RadioSonde
  • radir
  • RadOnc
  • RadTran
  • RAdwords
  • rags2ridges
  • rain
  • rainbow
  • raincpc
  • rainfreq
  • rAltmetric
  • RAM
  • rama
  • Rambo
  • Ramd
  • ramify
  • RamiGO
  • RAMP
  • RAMpath
  • ramps
  • randaes
  • randNames
  • random
  • RandomFields
  • RandomFieldsUtils
  • randomForest
  • randomForestSRC
  • randomGLM
  • randomizationInference
  • randomizeBE
  • randomizr
  • randomLCA
  • randomNames
  • random.polychor.pa
  • randomUniformForest
  • randPack
  • randtests
  • randtoolbox
  • RandVar
  • RankAggreg
  • Rankcluster
  • rankdist
  • rankhazard
  • RankProd
  • RankResponse
  • RANN
  • RANN.L1
  • RAP
  • RapidPolygonLookup
  • RApiSerialize
  • rappdirs
  • rapport
  • rapportools
  • RArcInfo
  • rareGE
  • rareNMtests
  • Rariant
  • Rarity
  • rARPACK
  • RaschSampler
  • rasclass
  • raster
  • rasterVis
  • rateratio.test
  • raters
  • rationalfun
  • RAtmosphere
  • rattle
  • rawFasta
  • rbamtools
  • RbcBook1
  • rbefdata
  • rbenchmark
  • rBeta2009
  • RBGL
  • rbhl
  • RBioinf
  • rBiopaxParser
  • rbison
  • Rbitcoin
  • rbitcoinchartsapi
  • RBitly
  • RBM
  • rbmn
  • Rborist
  • rbounds
  • Rbowtie
  • RBPcurve
  • rbsurv
  • rbugs
  • rbundler
  • RCA
  • R.cache
  • Rcade
  • RCALI
  • Rcapture
  • rCarto
  • RCASPAR
  • RCassandra
  • rcbalance
  • rcdd
  • rcdk
  • rcdklibs
  • RCEIM
  • Rcell
  • RcellData
  • rcellminer
  • Rcgmin
  • rchallenge
  • Rchemcpp
  • Rchoice
  • rChoiceDialogs
  • rcicr
  • RCircos
  • RClimMAWGEN
  • rClinicalCodes
  • rclinicaltrials
  • Rclusterpp
  • rCMA
  • RcmdrMisc
  • RCMIP5
  • Rcolombos
  • RColorBrewer
  • RConics
  • rcorpora
  • Rcpi
  • RCPmod
  • Rcpp
  • Rcpp11
  • RcppAnnoy
  • RcppArmadillo
  • RcppBDT
  • RcppClassic
  • RcppClassicExamples
  • RcppDE
  • RcppDL
  • RcppEigen
  • RcppExamples
  • RcppFaddeeva
  • RcppParallel
  • RcppProgress
  • RcppRoll
  • RcppSMC
  • RcppStreams
  • RcppXts
  • rcrossref
  • RCryptsy
  • Rcsdp
  • rCUR
  • RCurl
  • RCyjs
  • RCytoscape
  • Rd2roxygen
  • rda
  • RDataCanvas
  • rdatamarket
  • RDAVIDWebService
  • rdd
  • rdetools
  • R.devices
  • RDIDQ
  • Rdisop
  • Rdistance
  • RDML
  • rDNA
  • RDota
  • Rdpack
  • rdrobust
  • rdrop2
  • RDRToolbox
  • rdryad
  • RDS
  • Rdsdp
  • Rdsm
  • RDSTK
  • rDVR
  • reactome.db
  • ReactomePA
  • ReacTran
  • readbitmap
  • readBrukerFlexData
  • reader
  • readGenalex
  • readMLData
  • readMzXmlData
  • readODS
  • ReadqPCR
  • readr
  • readstata13
  • readxl
  • RealVAMS
  • reams
  • reb
  • rebird
  • rebmix
  • rebus
  • RECA
  • recalls
  • ReCiPa
  • recluster
  • recommenderlab
  • recommenderlabBX
  • recommenderlabJester
  • reconstructr
  • RecordLinkage
  • Records
  • REdaS
  • redcapAPI
  • REDCapR
  • RedditExtractoR
  • RedeR
  • redist
  • REDseq
  • REEMtree
  • ref
  • refGenome
  • RefManageR
  • RefNet
  • RefPlus
  • refset
  • refund
  • refund.wave
  • RegClust
  • reGenotyper
  • regexr
  • regioneR
  • regionReport
  • registry
  • reglogit
  • regpro
  • regress
  • RegressionFactory
  • regRSM
  • regsubseq
  • regtest
  • rehh
  • rela
  • relaimpo
  • relations
  • relaxnet
  • relaxo
  • reldist
  • relevent
  • Reliability
  • ReliabilityTheory
  • reliaR
  • relimp
  • relSim
  • relsurv
  • RelValAnalysis
  • remix
  • rEMM
  • remMap
  • remote
  • Renext
  • rentrez
  • Reol
  • ReorderCluster
  • RepeatedHighDim
  • repfdr
  • Repitools
  • replicatedpp2w
  • replicationInterval
  • repmis
  • repolr
  • ReporteRs
  • ReporteRsjars
  • ReportingTools
  • reportr
  • reports
  • reporttools
  • REPPlab
  • repra
  • represent
  • reproducer
  • ReQON
  • REQS
  • resample
  • resemble
  • reshape
  • reshape2
  • ResistorArray
  • ResourceSelection
  • RESS
  • restimizeapi
  • restlos
  • restorepoint
  • retimes
  • retistruct
  • retrosheet
  • reutils
  • reval
  • revealedPrefs
  • RevEcoR
  • reweight
  • rex
  • rexpokit
  • Rfacebook
  • rFDSN
  • rFerns
  • RFGLS
  • RFgroove
  • rfigshare
  • R.filesets
  • RFinanceYJ
  • rfishbase
  • rfisheries
  • Rfit
  • RFLPtools
  • RFmarkerDetector
  • rfoaas
  • RFOC
  • RForcecom
  • rfordummies
  • rforensicbatwing
  • rfPermute
  • rfPred
  • RFreak
  • rfUtilities
  • RGA
  • rgabriel
  • rGADEM
  • RGalaxy
  • rgam
  • rgauges
  • RGCCA
  • rgcvpack
  • RGENERATE
  • RGenetics
  • rgenoud
  • rgexf
  • RGIFT
  • rgl
  • rglobi
  • RGoogleAnalytics
  • RgoogleMaps
  • rgp
  • rgpui
  • rgr
  • RGraphics
  • Rgraphviz
  • rgrass7
  • rGREAT
  • RGSEA
  • rgsepd
  • RH2
  • rhandsontable
  • rhdf5
  • rHealthDataGov
  • rhosp
  • RhpcBLASctl
  • rHpcc
  • RHT
  • Rhtslib
  • R.huge
  • rHVDM
  • ri
  • RI2by2
  • riboSeqR
  • riceware
  • rich
  • ridge
  • RidgeFusion
  • ridigbio
  • Ridit
  • RIFS
  • RIGHT
  • RImageJROI
  • RImpala
  • rinat
  • rindex
  • Ringo
  • RInside
  • RInSp
  • rio
  • rioja
  • RIPSeeker
  • riskRegression
  • risksetROC
  • riskSimul
  • RISmed
  • Ritc
  • RItools
  • riv
  • rivernet
  • riverplot
  • rivervis
  • Rivivc
  • rivr
  • RJaCGH
  • RJafroc
  • rJava
  • rJavax
  • RJDBC
  • rje
  • Rjpstatdb
  • RJSDMX
  • rjson
  • RJSONIO
  • rjstat
  • rJython
  • rkafka
  • rkafkajars
  • RKEA
  • RKEAjars
  • rknn
  • rkt
  • rkvo
  • Rlab
  • Rlabkey
  • rLakeAnalyzer
  • rlecuyer
  • rLiDAR
  • Rlinkedin
  • rlist
  • rlm
  • rlme
  • RLMM
  • RLRsim
  • rLTP
  • RLumShiny
  • RM2
  • rmaf
  • Rmagpie
  • RMallow
  • Rmalschains
  • RMark
  • rmarkdown
  • rmatio
  • R.matlab
  • RMAWGEN
  • RMC
  • RMediation
  • rmeta
  • rmetasim
  • R.methodsS3
  • rminer
  • RmiR
  • RmiR.Hs.miRNA
  • Rmisc
  • Rmixmod
  • RmixmodCombi
  • RMKdiscrete
  • rmngb
  • RMOA
  • RMOAjars
  • RMongo
  • rmongodb
  • Rmonkey
  • rmp
  • rms
  • rms.gof
  • RMTstat
  • RMySQL
  • RNAinteract
  • RNAither
  • RNAprobR
  • RNAseqData.HNRNPC.bam.chr14
  • rnaSeqMap
  • RNASeqPower
  • RnaSeqSampleSize
  • RnaSeqSampleSizeData
  • rnaseqWrapper
  • RnavGraphImageData
  • RnBeads
  • rnbn
  • RNCBIEUtilsLibs
  • rncl
  • RND
  • rneos
  • RNetLogo
  • RNeXML
  • rngSetSeed
  • rngtools
  • rngWELL
  • rngwell19937
  • RNiftyReg
  • Rnits
  • rNMF
  • rNOMADS
  • roar
  • ROAuth
  • RobAStBase
  • robCompositions
  • robcor
  • robeth
  • robfilter
  • RobLox
  • RobPer
  • RobRex
  • RobRSVD
  • RObsDat
  • robumeta
  • robust
  • RobustAFT
  • robustbase
  • robustDA
  • RobustEM
  • robustfa
  • robustgam
  • robustHD
  • robustlmm
  • robustloggamma
  • RobustRankAggreg
  • robustreg
  • robustvarComp
  • robustX
  • ROC
  • ROC632
  • rocc
  • rockchalk
  • rococo
  • ROCR
  • ROCS
  • ROCt
  • ROCwoGS
  • rodd
  • ROI
  • ROI.plugin.quadprog
  • Roleswitch
  • Rolexa
  • rols
  • ROntoTools
  • R.oo
  • Rook
  • RootsExtremaInflections
  • rootSolve
  • ropensecretsapi
  • ROptEst
  • ROptEstOld
  • ROptRegTS
  • ROSE
  • rotationForest
  • rotations
  • Rothermel
  • roughrf
  • RoughSetKnowledgeReduction
  • RoughSets
  • rowr
  • roxygen2
  • royston
  • RPA
  • RPANDA
  • rpart
  • rpartitions
  • rpart.plot
  • rpartScore
  • rpart.utils
  • RPCLR
  • Rpdb
  • RPEnsemble
  • rpf
  • Rphylip
  • Rphylopars
  • rPlant
  • rplexos
  • rplos
  • rplotengine
  • RPMG
  • RPMM
  • rportfolios
  • RPPairwiseDesign
  • rPref
  • rprime
  • rprintf
  • RpsiXML
  • rpsychi
  • rpubchem
  • RPublica
  • RPushbullet
  • rpx
  • rPython
  • Rqc
  • rqPen
  • Rquake
  • rqubic
  • rr
  • Rramas
  • rrBLUP
  • rrBlupMethod6
  • rrcov
  • rrcovHD
  • rrcovNA
  • rRDP
  • Rrdrand
  • rredis
  • RRF
  • RRHO
  • rrlda
  • RRreg
  • R.rsp
  • RRTCS
  • rrules
  • RSADBE
  • rsae
  • RSAGA
  • Rsampletrees
  • Rsamtools
  • rsatscan
  • rSCA
  • rscala
  • RSclient
  • rscproxy
  • RSDA
  • rsdepth
  • rsdmx
  • rseedcalc
  • RSEIS
  • RSelenium
  • rsem
  • Rserve
  • rSFA
  • rSFFreader
  • RSGHB
  • RSiena
  • RsimMosaic
  • RSiteCatalyst
  • RSKC
  • rsm
  • rsml
  • RSNNS
  • rsnps
  • RSocrata
  • RSofia
  • Rsolnp
  • Rsomoclu
  • rspa
  • rspear
  • RSPS
  • RSQLite
  • RSQLServer
  • rstackdeque
  • RStars
  • rstiefel
  • RStorm
  • rstream
  • rstudioapi
  • rsubgroup
  • Rsubread
  • Rsundials
  • rsunlight
  • RSurveillance
  • RSvgDevice
  • RSVGTipsDevice
  • RSVSim
  • rSymPy
  • rtable
  • rTableICC
  • rtape
  • RTCA
  • RTConnect
  • RTDE
  • rtematres
  • rTensor
  • RTextTools
  • RTextureMetrics
  • rtf
  • rtkpp
  • RTN
  • RTOMO
  • rtop
  • RTopper
  • rtracklayer
  • Rtreemix
  • RTriangle
  • rTRM
  • rTRMui
  • rts
  • Rtsne
  • Rttf2pt1
  • Rtts
  • rtype
  • Ruchardet
  • rucm
  • rugarch
  • rUnemploymentData
  • RUnit
  • runittotestthat
  • Runiversal
  • Runuran
  • R.utils
  • ruv
  • RUVcorr
  • RUVnormalize
  • RUVnormalizeData
  • RUVSeq
  • rv
  • RVAideMemoire
  • rvalues
  • Rvcg
  • rversions
  • rvertnet
  • rvest
  • RVFam
  • rvgtest
  • rvHPDT
  • Rvmmin
  • RVowpalWabbit
  • RVsharing
  • rvTDT
  • RVtests
  • Rwave
  • RWBP
  • RWeather
  • RWebLogo
  • RWebServices
  • RWeka
  • RWekajars
  • RWiener
  • Rwinsteps
  • rworldmap
  • rworldxtra
  • rwt
  • RxCEcolInf
  • RXKCD
  • RXMCDA
  • RxnSim
  • RXshrink
  • Ryacas
  • RYoudaoTranslate
  • ryouready
  • rYoutheria
  • s20x
  • s2dverification
  • s4vd
  • S4Vectors
  • Sabermetrics
  • sac
  • saccades
  • sadists
  • sads
  • sae
  • sae2
  • saemix
  • SAENET
  • saery
  • saeSim
  • SAFD
  • safe
  • safeBinaryRegression
  • safi
  • sagenhaft
  • SAGx
  • SAM
  • SamplerCompare
  • sampleSelection
  • samplesize
  • Sample.Size
  • samplesize4surveys
  • SampleSizeMeans
  • SampleSizeProportions
  • sampling
  • samplingbook
  • samplingEstimates
  • SamplingStrata
  • samplingVarEst
  • sampSurf
  • samr
  • SamSPECTRAL
  • SAMUR
  • SAMURAI
  • sand
  • sandwich
  • sangerseqR
  • sanitizers
  • sanon
  • SANTA
  • sapa
  • SAPP
  • saps
  • sas7bdat
  • SAScii
  • SASmixed
  • SASPECT
  • saturnin
  • SAVE
  • saves
  • savR
  • saws
  • sBF
  • sbgcop
  • sbioPN
  • SBMLR
  • sbmSDP
  • SBRect
  • SBSA
  • sca
  • scagnostics
  • Scale
  • scales
  • scalreg
  • scam
  • SCAN.UPC
  • scape
  • scar
  • scaRabee
  • scatterD3
  • scatterplot3d
  • SCBmeanfd
  • SCEPtER
  • SCEPtERbinary
  • SCGLR
  • scholar
  • schoolmath
  • schoRsch
  • schwartz97
  • SCI
  • scidb
  • SciencesPo
  • scio
  • sciplot
  • ScISI
  • SciViews
  • SCMA
  • score
  • ScoreGGUM
  • SCORER2
  • scoring
  • ScottKnott
  • scout
  • SCperf
  • ScrabbleScore
  • scrapeR
  • ScreenClean
  • scrime
  • scriptests
  • SCRT
  • scrypt
  • scuba
  • SCVA
  • sda
  • SDaA
  • sdcMicro
  • sdcTarget
  • SDDE
  • sddpack
  • sde
  • sdef
  • SDMTools
  • sdmvspecies
  • sdnet
  • sdPrior
  • sdprisk
  • sdtoolkit
  • sdwd
  • seacarb
  • sealasso
  • searchable
  • SearchTrees
  • seas
  • SEAsic
  • season
  • seasonal
  • seawaveQ
  • SEchart
  • SECP
  • secr
  • secrdesign
  • secrlinear
  • seedy
  • seeg
  • seem
  • SEER2R
  • SEERaBomb
  • seg
  • SegCorr
  • segmag
  • segmented
  • Segmentor3IsBack
  • segmentSeq
  • seismic
  • seismicRoll
  • Sejong
  • SEL
  • selectiongain
  • selectMeta
  • selectr
  • selectspm
  • SeleMix
  • SELEX
  • selfea
  • selfingTree
  • SelvarMix
  • SemDist
  • semiArtificial
  • SEMID
  • SemiMarkov
  • SemiPar
  • semisupKernelPCA
  • SEMModComp
  • semPLS
  • semsfa
  • semTools
  • sendmailR
  • sensitivity
  • SensitivityCaseControl
  • sensitivitymv
  • sensitivitymw
  • sensitivityPStrat
  • SensoMineR
  • sensory
  • sensR
  • SenSrivastava
  • SensusR
  • separationplot
  • seq2pathway
  • seq2pathway.data
  • SeqArray
  • seqbias
  • seqCBS
  • seqCNA.annot
  • seqDesign
  • SeqGSEA
  • seqinr
  • seqLogo
  • seqMeta
  • seqminer
  • seqmon
  • seqPattern
  • seqPERM
  • seqplots
  • seqRFLP
  • seqTools
  • sequences
  • Sequential
  • SeqVarTools
  • seriation
  • seroincidence
  • servr
  • sesem
  • session
  • SetMethods
  • SETPath
  • setRNG
  • sets
  • settings
  • setwidth
  • severity
  • sExtinct
  • sfa
  • sfsmisc
  • sft
  • SGCS
  • sgd
  • sgeostat
  • SGL
  • sglasso
  • sglOptim
  • sglr
  • sgof
  • SGP
  • sGPCA
  • SGPdata
  • sgPLS
  • sgr
  • sgRSEA
  • SGSeq
  • sgt
  • shape
  • shapefiles
  • shapeR
  • shapes
  • SharpeR
  • sharpshootR
  • SHELF
  • shiny
  • shinyAce
  • shinybootstrap2
  • shinyBS
  • shinydashboard
  • shinyFiles
  • shinyjs
  • shinyMethyl
  • shinyRGL
  • shinythemes
  • shinyTree
  • SHIP
  • shopifyr
  • ShortRead
  • shotGroups
  • showtext
  • showtextdb
  • shp2graph
  • shrink
  • ShrinkCovMat
  • shuffle
  • siar
  • sideChannelAttack
  • sidier
  • sievetest
  • sig
  • sigaR
  • SigCheck
  • sigclust
  • SigFuge
  • siggenes
  • SightabilityModel
  • sigloc
  • signal
  • signalHsmm
  • signmedian.test
  • sigPathway
  • sigsquared
  • SII
  • SIM
  • simba
  • SimBindProfiles
  • simboot
  • simcausal
  • SimComp
  • SimCorMultRes
  • simctest
  • Sim.DiffProc
  • simecol
  • simex
  • simexaft
  • simFrame
  • SimilarityMeasures
  • similaRpeak
  • SIMMS
  • simMSM
  • simone
  • simPH
  • simpIntLists
  • simpleaffy
  • simpleboot
  • simpleNeural
  • SimplicialCubature
  • simPop
  • Simpsons
  • simrel
  • simsalapar
  • simsem
  • SimSeq
  • simSummary
  • simTool
  • SimuChemPC
  • simulatorZ
  • SimultAnR
  • SIN
  • sincell
  • SINGLE
  • siplab
  • siRSM
  • SIS
  • sisus
  • sisVIVE
  • sitar
  • sitools
  • sivipm
  • SixSigma
  • sizepower
  • SiZer
  • SJava
  • sjdbc
  • sjmisc
  • sjPlot
  • SKAT
  • skatMeta
  • skda
  • skellam
  • SkewHyperbolic
  • skewr
  • skewt
  • Skillings.Mack
  • skmeans
  • sla
  • slackr
  • slam
  • SLC
  • sld
  • Sleuth2
  • Sleuth3
  • slfm
  • SLGI
  • SLHD
  • SLOPE
  • slp
  • SLqPCR
  • sm
  • smaa
  • smac
  • smacof
  • smacpod
  • smam
  • SMAP
  • SmarterPoland
  • smatr
  • SMC
  • smcfcs
  • smco
  • SMCP
  • SMCRM
  • smcure
  • smcUtils
  • smdata
  • smdc
  • smds
  • sme
  • SMFI5
  • smfsb
  • smint
  • SMIR
  • smirnov
  • SmithWilsonYieldCurve
  • SML
  • SMNCensReg
  • smnet
  • smoof
  • smoother
  • SmoothHazard
  • smoothHR
  • smoothie
  • smoothmest
  • smoothSurv
  • smoothtail
  • SMPracticals
  • SMR
  • sms
  • smss
  • SMVar
  • sn
  • sna
  • SNAGEE
  • SNAGEEdata
  • snapshot
  • SNFtool
  • snht
  • snipEM
  • snm
  • snow
  • SnowballC
  • snowfall
  • snowFT
  • snpar
  • SNPassoc
  • SNPchip
  • SNPmaxsel
  • snp.plotter
  • SNPRelate
  • snpRF
  • snpStats
  • sns
  • SNSequate
  • SOAR
  • soc.ca
  • SocialMediaMineR
  • SocialNetworks
  • SocialPosition
  • SOD
  • SoDA
  • SODC
  • Sofi
  • softclassval
  • SoftClustering
  • softImpute
  • soGGi
  • soilDB
  • soilprofile
  • SoilR
  • soilwater
  • solaR
  • solarius
  • solr
  • som
  • soma
  • SomatiCA
  • SomaticSignatures
  • SOMbrero
  • somebm
  • someKfwer
  • someMTP
  • somplot
  • sonicLength
  • soobench
  • SOPIE
  • SOR
  • SortableHTMLTables
  • sortinghat
  • sorvi
  • sos
  • sos4R
  • sotkanet
  • SoundexBR
  • SOUP
  • source.gist
  • sp
  • sp23design
  • spa
  • SPA3G
  • spaa
  • space
  • spaceExt
  • spacejam
  • SpacePAC
  • spacetime
  • spacodiR
  • spacom
  • spade
  • spam
  • spaMM
  • spanel
  • spanr
  • SPAr
  • sparc
  • sparcl
  • spareserver
  • spark
  • sparktex
  • SPARQL
  • sparr
  • sparseBC
  • sparsediscrim
  • SparseGrid
  • sparseHessianFD
  • sparseLDA
  • sparseLTSEigen
  • SparseM
  • sparseMVN
  • sparsenet
  • sparseSEM
  • SparseTSCGM
  • spartan
  • spatcounts
  • spatgraphs
  • spatial
  • spatialCovariance
  • SpatialEpi
  • SpatialExtremes
  • spatial.gev.bma
  • spatialkernel
  • spatialnbda
  • SpatialNP
  • SpatialPack
  • SpatialPosition
  • spatialprobit
  • spatialsegregation
  • spatialTailDep
  • SpatialTools
  • SpatialVx
  • SpatioTemporal
  • SpatPCA
  • spatstat
  • spBayes
  • spBayesSurv
  • spc
  • spca
  • spcadjust
  • spcosa
  • spcov
  • spcr
  • spd
  • spdep
  • spdynmod
  • spe
  • speccalt
  • SpecHelpers
  • SPECIES
  • SpeciesMix
  • specificity
  • SpeCond
  • SpecsVerification
  • spectralGP
  • speedglm
  • speff2trial
  • SPEI
  • SPEM
  • sperrorest
  • spfrontier
  • spgrass6
  • spgs
  • spgwr
  • sphereplot
  • SphericalCubature
  • SphericalK
  • SpherWave
  • sphet
  • spi
  • SPIA
  • SPIAssay
  • spider
  • spiders
  • spikeLI
  • spikeslab
  • spikeSlabGAM
  • SPIn
  • spkTools
  • splancs
  • splicegear
  • spliceR
  • spliceSites
  • SplicingGraphs
  • splines
  • splitstackshape
  • splm
  • splots
  • spls
  • splus2R
  • splusTimeDate
  • splusTimeSeries
  • spMC
  • SPmlficmcm
  • spnet
  • sporm
  • SportsAnalytics
  • spotSegmentation
  • SPREDA
  • sprex
  • sprinter
  • sprm
  • sprsmdl
  • SPRT
  • SPSL
  • spsmooth
  • spt
  • spTDyn
  • spTest
  • spThin
  • spTimer
  • sptm
  • spuRs
  • sqldf
  • sqliter
  • sqlutils
  • SQN
  • SQUADD
  • SQUAREM
  • squash
  • sra
  • SRAdb
  • sRAP
  • SRCS
  • srd
  • sROC
  • ssanv
  • sscor
  • sscore
  • ssd
  • sse
  • sSeq
  • ssfa
  • ssfit
  • ssh.utils
  • ssize
  • ssize.fdr
  • ssmrob
  • SSN
  • SSOAP
  • SSPA
  • sspline
  • sspse
  • SSrat
  • sss
  • SSsimple
  • ssvd
  • ssviz
  • ssym
  • st
  • stabledist
  • StableEstim
  • stabs
  • Stack
  • stackoverflow
  • stagePop
  • stam
  • StAMPP
  • STAN
  • StandardizeText
  • StanHeaders
  • STAR
  • staRank
  • stargazer
  • Starr
  • startupmsg
  • stashR
  • Stat2Data
  • statar
  • StatDataML
  • statebins
  • STATegRa
  • statfi
  • stationaRy
  • StatMatch
  • StatMeasures
  • statmod
  • statnet
  • statnet.common
  • statnetWeb
  • staTools
  • StatRank
  • stats
  • stats4
  • stcm
  • steepness
  • stellaR
  • Stem
  • stemHypoxia
  • STEPCAM
  • stepNorm
  • stepp
  • stepPlr
  • stepR
  • stepwise
  • stepwiseCM
  • stheoreme
  • stilt
  • stima
  • stinepack
  • stm
  • stmCorrViz
  • STMedianPolish
  • StMoMo
  • StMoSim
  • stocc
  • stochprofML
  • stochvol
  • stockPortfolio
  • stocks
  • stoichcalc
  • Storm
  • STPGA
  • stpp
  • stppResid
  • StrainRanking
  • strap
  • strataG
  • stratification
  • stratigraph
  • StratSel
  • straweib
  • stream
  • Streamer
  • StreamMetabolism
  • streamMOA
  • streamR
  • stremo
  • stressr
  • StressStrength
  • STRINGdb
  • stringdist
  • stringi
  • stringr
  • strucchange
  • stsm.class
  • SubCultCon
  • subgroup
  • SubLasso
  • SubpathwayGMir
  • subplex
  • subrank
  • subselect
  • subsemble
  • subtype
  • sudoku
  • sudokuAlt
  • SUE
  • summarytools
  • Sunder
  • SunterSampling
  • supclust
  • supcluster
  • superdiag
  • SuperLearner
  • superMDS
  • superpc
  • SuppDists
  • support.BWS
  • support.CEs
  • supraHex
  • surface
  • Surrogate
  • suRtex
  • surv2sampleComp
  • survAccuracyMeasures
  • survAUC
  • survC1
  • survcomp
  • SurvCorr
  • surveillance
  • survexp.fr
  • survey
  • surveydata
  • surveyeditor
  • Survgini
  • survIDINRI
  • survival
  • survivalMPL
  • survivalROC
  • survJamda.data
  • SurvLong
  • survMisc
  • survPresmooth
  • survrec
  • survRM2
  • survsim
  • Sushi
  • sva
  • svapls
  • svcm
  • svd
  • svDialogs
  • svdvisual
  • SVGAnnotation
  • svGUI
  • svgViewR
  • svHttp
  • svKomodo
  • SVM2CRM
  • SVM2CRMdata
  • svMisc
  • SVMMaj
  • SVMMatch
  • svmpath
  • svSweave
  • svTools
  • svUnit
  • SvyNom
  • svyPVpack
  • SWATmodel
  • SweaveListingUtils
  • sweidnumbr
  • swfscMisc
  • SwimR
  • swirl
  • SwissAir
  • switchBox
  • switchnpreg
  • switchr
  • switchrGist
  • SWMPr
  • sybil
  • sybilccFBA
  • sybilcycleFreeFlux
  • sybilDynFBA
  • sybilEFBA
  • symbolicDA
  • symbols
  • symmoments
  • synbreed
  • synbreedData
  • synchronicity
  • synchrony
  • SynchWave
  • SYNCSA
  • SynergizeR
  • synlik
  • synRNASeqNet
  • Synth
  • synthpop
  • sysfonts
  • systemfit
  • systemicrisk
  • systemPipeR
  • syuzhet
  • tab
  • taber
  • Table1Heatmap
  • table1xls
  • TableMonster
  • tableone
  • tableplot
  • tables
  • TableToLongForm
  • tabplot
  • tabplotd3
  • tabuSearch
  • tagcloud
  • tailloss
  • TAM
  • TANOVA
  • TaoTeProgramming
  • TapeR
  • TAQMNGR
  • TargetScore
  • taRifx
  • tau
  • TauP.R
  • tawny
  • tawny.types
  • taxize
  • Taxonstand
  • tbart
  • tbdiag
  • TBEST
  • TBSSurvival
  • TCC
  • tcltk
  • tclust
  • tcR
  • TDAmapper
  • TDARACNE
  • TDboost
  • TDCor
  • TDD
  • tdr
  • tdthap
  • TeachingDemos
  • TeachingSampling
  • TeachNet
  • TEEReg
  • teigen
  • tempdisagg
  • tensor
  • tensorA
  • TEQC
  • TEQR
  • TERAplusB
  • tergm
  • termstrc
  • ternarynet
  • ternvis
  • TESS
  • tester
  • testit
  • TestSurvRec
  • testthat
  • testthatsomemore
  • texmex
  • texmexseq
  • TExPosition
  • texreg
  • textcat
  • textir
  • textometry
  • textreg
  • TFDEA
  • tfer
  • TFMPvalue
  • tfplot
  • tframe
  • tframePlus
  • TFX
  • tgcd
  • tgp
  • tgram
  • TH.data
  • Thermimage
  • thermocouple
  • thgenetics
  • Thinknum
  • ThreeArmedTrials
  • threeboost
  • threejs
  • ThreeWay
  • threg
  • ThresholdROC
  • thsls
  • tibbrConnector
  • TickExec
  • tictoc
  • TiddlyWikiR
  • Tides
  • tidyjson
  • tidyr
  • tiger
  • tigerstats
  • tightClust
  • tigre
  • tikzDevice
  • tileHMM
  • TilePlot
  • tilingArray
  • timecourse
  • timeDate
  • timeit
  • timeline
  • TimeMachine
  • timeordered
  • TimeProjection
  • timereg
  • timeROC
  • timesboot
  • timeSeries
  • timetools
  • timetree
  • TimeWarp
  • timma
  • timsac
  • TIN
  • Tinflex
  • TInPosition
  • tipom
  • tis
  • TitanCNA
  • tlemix
  • tlm
  • tlmec
  • tlnise
  • tm
  • TMDb
  • tmle
  • tmle.npvi
  • tmod
  • tm.plugin.alceste
  • tm.plugin.dc
  • tm.plugin.europresse
  • tm.plugin.factiva
  • tm.plugin.lexisnexis
  • tm.plugin.mail
  • tm.plugin.webmining
  • tmvtnorm
  • tnet
  • tolerance
  • tools
  • toOrdinal
  • ToPASeq
  • topGO
  • TopKLists
  • topmodel
  • topsis
  • tosls
  • tourr
  • toxtestD
  • tpe
  • TPmsm
  • TPP
  • tpr
  • track
  • TrackReconstruction
  • tracktables
  • tractor.base
  • traitr
  • traits
  • Traitspace
  • traj
  • trajectories
  • TraMineR
  • TraMineRextras
  • TRAMPR
  • translate
  • translateR
  • translateSPSS2R
  • translation.ko
  • translations
  • tRanslatome
  • transport
  • TransView
  • trapezoid
  • TRD
  • TreatmentSelection
  • treatSens
  • tree
  • treebase
  • treeclim
  • treeClust
  • treecm
  • treelet
  • treemap
  • TreePar
  • treeperm
  • TreeSim
  • TreeSimGM
  • treethresh
  • trend
  • TrialSize
  • triangle
  • trifield
  • triform
  • trigger
  • TriMatch
  • trimcluster
  • trimTrees
  • trio
  • trioGxE
  • trip
  • tripack
  • TripleR
  • triplex
  • TRONCO
  • trotter
  • TRSbook
  • trueskill
  • truncdist
  • truncgof
  • truncnorm
  • truncreg
  • truncSP
  • trust
  • trustOptim
  • TSA
  • tsallisqexp
  • tsbridge
  • tsbugs
  • tsc
  • TSCAN
  • TSclust
  • TScompare
  • tscount
  • TSdata
  • TSdbi
  • TSdist
  • tsDyn
  • tseries
  • tseriesChaos
  • tseriesEntropy
  • tsfa
  • TSfame
  • TSHRC
  • tsintermittent
  • TSMining
  • TSmisc
  • tsModel
  • TSMySQL
  • tsne
  • TSP
  • tspair
  • Tsphere
  • tspmeta
  • TSPred
  • TSsdmx
  • TSSi
  • TSsql
  • TSSQLite
  • TSTutorial
  • tth
  • TTmoment
  • TTR
  • ttutils
  • ttwa
  • tufterhandout
  • TukeyC
  • tumblR
  • TunePareto
  • tuneR
  • tuple
  • turboEM
  • TurboNorm
  • turfR
  • turner
  • TurtleGraphics
  • TUWmodel
  • tvd
  • tvm
  • twang
  • tweeDEseq
  • tweedie
  • twilight
  • twitteR
  • TwoCop
  • twoStageGwasPower
  • twostageTE
  • TwoStepCLogit
  • TxDb.Hsapiens.UCSC.hg19.knownGene
  • TxDb.Mmusculus.UCSC.mm9.knownGene
  • txtplot
  • TypeInfo
  • UBCRM
  • ucbthesis
  • ucminf
  • ump
  • unbalanced
  • unbalhaar
  • UNDO
  • UNF
  • unfoldr
  • Unicode
  • uniCox
  • unifiedWMWqPCR
  • uniftest
  • UniProt.ws
  • uniqtag
  • uniqueAtomMat
  • uniReg
  • unittest
  • unmarked
  • untb
  • upclass
  • uplift
  • UPMASK
  • urca
  • urltools
  • UScensus2000cdp
  • UScensus2000tract
  • UScensus2010
  • usdm
  • useful
  • userfriendlyscience
  • UsingR
  • uskewFactors
  • usl
  • ustyc
  • utility
  • utils
  • uuid
  • UWHAM
  • vacem
  • VanillaICE
  • varbvs
  • varComp
  • vardiag
  • vardpoor
  • VaRES
  • VAR.etp
  • VariABEL
  • VarianceGamma
  • VariantAnnotation
  • VariantFiltering
  • VariantTools
  • vars
  • VarSelLCM
  • varSelRF
  • VarSwapPrice
  • vartors
  • vbdm
  • vbmp
  • vbsr
  • VCA
  • vcd
  • vcdExtra
  • vcrpart
  • VDA
  • vdg
  • Vdgraph
  • VdgRsm
  • vdmR
  • vec2dtransf
  • vecsets
  • VecStatGraphs2D
  • Vega
  • VegaMC
  • vegan
  • vegan3d
  • vegclust
  • vegdata
  • vegetarian
  • VennDiagram
  • venneuler
  • verification
  • vetools
  • VGAM
  • VGAMdata
  • VHDClassification
  • VideoComparison
  • VIF
  • VIFCP
  • VIGoR
  • VIM
  • violinmplot
  • vioplot
  • viopoints
  • viper
  • virtualspecies
  • visreg
  • visualFields
  • visualize
  • vitality
  • VizOR
  • VLF
  • VLMC
  • VNM
  • Voss
  • vowels
  • VoxR
  • VPdtw
  • vrmlgen
  • vrtest
  • vscc
  • vsn
  • VSURF
  • vtpnet
  • vudc
  • vwr
  • W2CWM2C
  • W3CMarkupValidator
  • waffect
  • waffle
  • wahc
  • walkscoreAPI
  • WARN
  • wasim
  • waterData
  • wateRmelon
  • WaterML
  • Wats
  • wavClusteR
  • waveband
  • waved
  • WaveletComp
  • wavelets
  • wavemulcor
  • waveslim
  • wavethresh
  • waveTiling
  • wbs
  • WCE
  • WCQ
  • WDI
  • weatherData
  • weaver
  • webbioc
  • webchem
  • webutils
  • webvis
  • WeightedCluster
  • weightedKmeans
  • WeightedPortTest
  • weightedScores
  • weights
  • weirs
  • wesanderson
  • wfe
  • wgaim
  • WGCNA
  • WhatIf
  • whisker
  • WhiteStripe
  • whoami
  • whoapi
  • WhopGenome
  • widals
  • widenet
  • wikibooks
  • WikidataR
  • WikipediaR
  • wikipediatrend
  • WikipediR
  • WilcoxCV
  • windex
  • WiSEBoot
  • witness
  • wkb
  • wle
  • WMDB
  • wmlf
  • wmtsa
  • wnominate
  • wombsoft
  • wordcloud
  • wordmatch
  • wordnet
  • WordPools
  • wpp2008
  • wpp2010
  • wpp2012
  • wppExplorer
  • wq
  • wrassp
  • WrightMap
  • write.snns
  • WriteXLS
  • WRS2
  • wrspathrowData
  • wskm
  • wsrf
  • wSVM
  • wtcrsk
  • WWGbook
  • x12
  • XBRL
  • XDE
  • x.ent
  • xergm
  • xgobi
  • xhmmScripts
  • XHWE
  • XiMpLe
  • xkcd
  • XLConnect
  • XLConnectJars
  • xlsx
  • xlsxjars
  • xmapbridge
  • Xmisc
  • XML
  • xml2
  • XML2R
  • XMLRPC
  • XMLSchema
  • XMRF
  • XNomial
  • xoi
  • xpose4
  • xtable
  • xtal
  • xtermStyle
  • xts
  • XVector
  • yacca
  • yaImpute
  • YaleToolkit
  • yaml
  • yaqcaffy
  • ycinterextra
  • yeastCC
  • yhat
  • yhatr
  • YieldCurve
  • ykmeans
  • YourCast
  • YplantQMC
  • YPmodel
  • YuGene
  • yuima
  • zCompositions
  • ZeBook
  • Zelig
  • ZeligChoice
  • ZeligGAM
  • ZeligMultilevel
  • zendeskR
  • zetadiv
  • zic
  • ZIM
  • zipcode
  • zipfR
  • zlibbioc
  • zoeppritz
  • zoo
  • zooaRch
  • zooimage
  • zoom
  • ztable
  • zyp
RAxML RAxML
http://sco.h-its.org/exelixis/web/software/raxml/index.html
Randomized Axelerated Maximum Likelihood (RAxML) is a tool for Maximum-likelihood based phylogenetic inference.
/wsu/apps/gnu-4.7.2/RAxML/RAxML-7.2.8
RSEM RSEM
http://deweylab.biostat.wisc.edu/rsem/

/wsu/apps/gnu-4.4.7/rsem/rsem-1.2.19
RSEM Sage
http://doc.sagemath.org/html/en/tutorial/index.html
Sage is free, open-source math software that supports research and teaching in algebra, geometry, number theory, cryptography, numerical computation, and related areas.
/wsu/apps/modules/sage-6.7
SAMtools SAMtools
http://samtools.sourceforge.net/
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
/wsu/apps/gnu-4.4.7/samtools/samtools-0.1.19
SciPY logo SciPy 0.10.0
http://scipy.org/
Module for Python. More information.
Screed Screed
https://github.com/ged-lab/screed.git
Shapeit ShapeIt
https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html
Application for estimation of haplotypes from genotype or sequencing data.
/wsu/apps/pre-compiled/shapeit/shapeit.v2.r837.GLIBCv2.12.Linux.static/bin/shapeit
Sicer Sicer
http://home.gwu.edu/~wpeng/Software.htm
Clustering approach for identification of enriched domains from histone modification ChIP-Seq data.
/wsu/apps/pre-compiled/sicer/sicer-1.1
Shore SHORE
http://sourceforge.net/projects/shore/
A squencing data analysis suite that maps and analyzes short DNA sequences.
/wsu/apps/gnu-4.4.7/shore/shore-0.9.3
SMALT SMALT
https://www.sanger.ac.uk/resources/software/smalt/
/wsu/apps/gnu-4.4.7/smalt/smalt-0.7.6/
SPades logo SPades
http://bioinf.spbau.ru/spades
/wsu/apps/gnu-4.7.2/SPAdes/SPAdes-3.5.0/
Shore STAR
https://github.com/alexdobin/STAR/releases
!*NOTE*! For STAR 2.50b you will need to load the gnu4.7.2 module (module load gnu-4.7.2/compiler)
/wsu/apps/gnu-4.4.7/star/STAR-STAR_2.4.0h1
/wsu/apps/gnu-4.7.2/star/STAR-2.5.0b/bin/Linux_x86_64/STAR
/wsu/apps/gnu-4.7.2/star/STAR-2.5.0b/bin/Linux_x86_64/STARlong
/wsu/apps/gnu-4.7.2/star/STAR-2.5.0b/bin/Linux_x86_64_static/STAR
/wsu/apps/gnu-4.7.2/star/STAR-2.5.0b/bin/Linux_x86_64_static/STARlong
Swig logo Swig
http://www.swig.org/download.html
Interface compiler that connects C and C++ programs with scripting languages such as Perl, Python, Ruby and Tcl.
/wsu/apps/gnu-4.4.7/swig/swig-3.0.2
Tcl logo Tcl
http://www.tcl.tk/
Tool Command Language, used for rapid prototyping, testing, scripted applications, and GUIs.
/wsu/apps/gnu-4.4.7/tcl/tcl8.6.1
Tensorflow logo Tensorflow
http://www.tensorflow.org/
TensorFlow is an open source software library for numerical computation using data flow graphs.
/wsu/apps/gnu-4.8.2/tensorflow/tensorflow-20161005/
TopHat logo tophat
http://tophat.cbcb.umd.edu/
Fast splice junction mapper for RNA-Seq reads.
/wsu/apps/gnu-4.4.7/tophat/tophat-2.0.12/bin
/wsu/apps/gnu-4.4.7/tophat/tophat-2-git-2016-01-19/bin/tophat
Torch logo Torch
http://torch.ch/
Torch is a scientific computing framework with wide support for machine learning algorithms that puts GPUs first.
/wsu/apps/gnu-4.7.2/torch/torch-20170207/
USADEL LAB Trimmomatic
http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/
/wsu/apps/pre-compiled/trimmomatic/trimmomatic-0.27
Trinity logo Trinity RNA-Seq Assembly
http://sourceforge.net/projects/trinityrnaseq/
Software solutions targeted to the reconstruction of full-length transcripts and alternatively spliced isoforms from Illumina RNA-Seq data.
/wsu/apps/gnu-4.4.7/trinityrnaseq/trinityrnaseq-2.1.0/
  • JellyFish
  • Inchworm
  • Chrysalis
  • QuantifyGraph
  • GraphFromFasta
  • ReadsToTranscripts
  • fastool
  • parafly
  • samtools-0.1.19
Visual DSD Visual DSD
http://boson.research.microsoft.com/webdna/
/wsu/apps/gnu-4.4.7/mono/mono-4.4.0/bin/mono /wsu/apps/gnu-4.4.7/mono/mono-4.4.0/bin/dsd.exe
Xfig logo Xfig
http://www.xfig.org/
An interactive drawing tool.
/usr/bin/xfig-Xaw3d
ZLIB logo ZLIB
http://www.zlib.net/
Library for general purpose lossless data-compression
/wsu/apps/gnu-4.4.7/zlib/zlib-1.2.8
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